RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 TOB1P50616 345 aaPredicted RBP11.7□□□□□ -0.54
VPS53-207ENST00000570510 PCBP4P57723 403 aaKnown RBP11.7□□□□□ -0.54
VPS53-207ENST00000570510 TNNC1P63316 161 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 MCM6Q14566 821 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 TBC1D25Q3MII6 688 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 TMEM119Q4V9L6 283 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 RILPL1Q5EBL4 403 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 MCTP1Q6DN14 999 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 PCSK4Q6UW60 755 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 LAYNQ6UX15 382 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 SERPINA13PQ6UXR4 307 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 C1orf216Q8TAB5 229 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 HVCN1Q96D96 273 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 ACCSQ96QU6 501 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 FAM117AQ9C073 453 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 CIPCQ9C0C6 399 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 ZNF518BQ9C0D4 1074 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 BTBD1Q9H0C5 482 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 MRPL44Q9H9J2 332 aaKnown RBP11.7□□□□□ -0.54
VPS53-207ENST00000570510 PDE11AQ9HCR9 933 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 SIX4Q9UIU6 781 aa11.7□□□□□ -0.54
VPS53-207ENST00000570510 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.7□□□□□ -0.54
VPS53-207ENST00000570510 PTPRQQ9UMZ3 2332 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 A8MXQ7 604 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 CLDN5O00501 218 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 SLC26A4O43511 780 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 SEMA4FO95754 770 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 BMP15O95972 392 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 IGLV3-19P01714 112 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 CD27P26842 260 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 DDIT3P35638 169 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 ATP5C1P36542 298 aaKnown RBP11.69□□□□□ -0.54
VPS53-207ENST00000570510 CTSKP43235 329 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 DUOXA2Q1HG44 320 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 ZNF720Q7Z2F6 126 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 EID2Q8N6I1 236 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 SCAMP5Q8TAC9 235 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 FAM84AQ96KN4 292 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 LHX5Q9H2C1 402 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 IKZF4Q9H2S9 585 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 CPNE5Q9HCH3 593 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 OSGEPQ9NPF4 335 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 TLR8Q9NR97 1041 aaKnown RBP11.69□□□□□ -0.54
VPS53-207ENST00000570510 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.69□□□□□ -0.54
VPS53-207ENST00000570510 MARK1Q9P0L2 795 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 THAP10Q9P2Z0 257 aaPredicted RBP11.69□□□□□ -0.54
VPS53-207ENST00000570510 NXF1Q9UBU9 619 aaKnown RBP11.69□□□□□ -0.54
VPS53-207ENST00000570510 CLCA2Q9UQC9 943 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 SMC3Q9UQE7 1217 aa11.69□□□□□ -0.54
VPS53-207ENST00000570510 MUC22E2RYF6 1773 aaPredicted RBP11.69□□□□□ -0.54
VPS53-207ENST00000570510 A0A1B0GTQ1 180 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 FAM47DPA6NHR8 397 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 CBX4O00257 560 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 DNTTP04053 509 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 CISD3P0C7P0 127 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 ACSL1P33121 698 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 ARRB1P49407 418 aaPredicted RBP11.68□□□□□ -0.54
VPS53-207ENST00000570510 SLC5A3P53794 718 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 CACNA2D1P54289 1103 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 WNT7BP56706 349 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 SURF1Q15526 300 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 PKDCCQ504Y2 493 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 PRAMEF14Q5SWL7 426 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 SNX30Q5VWJ9 437 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 KDM7AQ6ZMT4 941 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 BRAPQ7Z569 592 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 B3GALNT2Q8NCR0 500 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 GANCQ8TET4 914 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 WBP2Q969T9 261 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 BIRC7Q96CA5 298 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 MED8Q96G25 268 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 AK8Q96MA6 479 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 KCNK16Q96T55 309 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 ELF4Q99607 663 aaPredicted RBP11.68□□□□□ -0.54
VPS53-207ENST00000570510 MRPL45Q9BRJ2 306 aaKnown RBP11.68□□□□□ -0.54
VPS53-207ENST00000570510 ST6GALNAC4Q9H4F1 302 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 FBXO44Q9H4M3 255 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 PCIF1Q9H4Z3 704 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 INTS13Q9NVM9 706 aa11.68□□□□□ -0.54
VPS53-207ENST00000570510 CABIN1Q9Y6J0 2220 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 YKT6O15498 198 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 GCNT3O95395 438 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 TBX18O95935 607 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 CYBBP04839 570 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 GARTP22102 1010 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 CHKAP35790 457 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 ACADVLP49748 655 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 COPAP53621 1224 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 RACK1P63244 317 aaKnown RBP11.67□□□□□ -0.54
VPS53-207ENST00000570510 ILKQ13418 452 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 ZNF234Q14588 700 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 WDR72Q3MJ13 1102 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 TTC31Q49AM3 519 aaPredicted RBP11.67□□□□□ -0.54
VPS53-207ENST00000570510 ARL6IP4Q66PJ3 421 aaKnown RBP11.67□□□□□ -0.54
VPS53-207ENST00000570510 SCARA3Q6AZY7 606 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 FBXL19Q6PCT2 694 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 DYMQ7RTS9 669 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 ANKS1BQ7Z6G8 1248 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 ERICH1Q86X53 443 aa11.67□□□□□ -0.54
VPS53-207ENST00000570510 SFR1Q86XK3 245 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms