RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ICA1LQ8NDH6 482 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 C20orf27Q9GZN8 174 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 ETAA1Q9NY74 926 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 MRPL42Q9Y6G3 142 aaKnown RBP14.97□□□□□ -0.01
VPS35-210ENST00000568784 TEX264Q9Y6I9 313 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 TPP1O14773 563 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 ENO3P13929 434 aaPredicted RBP14.97□□□□□ -0.01
VPS35-210ENST00000568784 ETV4P43268 484 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 EFNA5P52803 228 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 KRT72Q14CN4 511 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 FAM47CQ5HY64 1035 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 PLD5Q8N7P1 536 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 USP13Q92995 863 aaPredicted RBP14.97□□□□□ -0.01
VPS35-210ENST00000568784 MOCOSQ96EN8 888 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 ELOVL4Q9GZR5 314 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 DHX33Q9H6R0 707 aaKnown RBP14.97□□□□□ -0.01
VPS35-210ENST00000568784 AS3MTQ9HBK9 375 aa14.97□□□□□ -0.01
VPS35-210ENST00000568784 KIF13BQ9NQT8 1826 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 METTL18O95568 372 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 UBA1P22314 1058 aaKnown RBP14.96□□□□□ -0.01
VPS35-210ENST00000568784 AP3M2P53677 418 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 DPY19L2Q6NUT2 758 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 KCNT2Q6UVM3 1135 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 FAM131BQ86XD5 332 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 FLAD1Q8NFF5 587 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 SSU72Q9NP77 194 aaKnown RBP14.96□□□□□ -0.01
VPS35-210ENST00000568784 BTBD7Q9P203 1132 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 APPL1Q9UKG1 709 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 RPL26L1Q9UNX3 145 aaKnown RBP14.96□□□□□ -0.01
VPS35-210ENST00000568784 PLA2G4CQ9UP65 541 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 UTRNP46939 3433 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 ERVK-10P10266 1014 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 PDPK2PQ6A1A2 396 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 GALNT15Q8N3T1 639 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 GSDMBQ8TAX9 411 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 RNF217Q8TC41 542 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 PIWIL2Q8TC59 973 aaKnown RBP14.96□□□□□ -0.01
VPS35-210ENST00000568784 SNRNP25Q9BV90 132 aaKnown RBP14.96□□□□□ -0.01
VPS35-210ENST00000568784 THAP1Q9NVV9 213 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 NRAPQ86VF7 1730 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 PGK2P07205 417 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 BPGMP07738 259 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 CYP2F1P24903 491 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 MGAT1P26572 445 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 ASPAP45381 313 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 NUDT2P50583 147 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 DEUP1Q05D60 604 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 TBL3Q12788 808 aaKnown RBP14.96□□□□□ -0.01
VPS35-210ENST00000568784 SURF1Q15526 300 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 GLRA4Q5JXX5 417 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 JADE1Q6IE81 842 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 NET1Q7Z628 596 aaPredicted RBP14.96□□□□□ -0.01
VPS35-210ENST00000568784 FAM83AQ86UY5 434 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 OR6Y1Q8NGX8 325 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 RAB3IL1Q8TBN0 382 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 PPP1R13LQ8WUF5 828 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 TSNARE1Q96NA8 513 aa14.96□□□□□ -0.01
VPS35-210ENST00000568784 LACTBL1A8MY62 500 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 TGDSO95455 350 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 AQP4P55087 323 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 IL31Q6EBC2 164 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 GADL1Q6ZQY3 521 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 C10orf107Q8IVU9 208 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 TTC16Q8NEE8 873 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 SEPT1Q8WYJ6 367 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 CNBD2Q96M20 576 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 ACO2Q99798 780 aaKnown RBP14.95□□□□□ -0.02
VPS35-210ENST00000568784 COL24A1Q17RW2 1714 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 C3orf70A6NLC5 250 aaPredicted RBP14.95□□□□□ -0.02
VPS35-210ENST00000568784 STBD1O95210 358 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 RAB27AP51159 221 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 MRPS5P82675 430 aaKnown RBP14.95□□□□□ -0.02
VPS35-210ENST00000568784 COG7P83436 770 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 MAP7Q14244 749 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 CYTH1Q15438 398 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 MPZL3Q6UWV2 235 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 ADAM32Q8TC27 787 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 LRGUKQ96M69 825 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 LGMNQ99538 433 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 LPIN3Q9BQK8 851 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 TLE6Q9H808 572 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 DDX18Q9NVP1 670 aaKnown RBP14.95□□□□□ -0.02
VPS35-210ENST00000568784 ARL2P36404 184 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 ARL4AP40617 200 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 GLRBP48167 497 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 PKNOX1P55347 436 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 SLC18A2Q05940 514 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 ANGEL2Q5VTE6 544 aaKnown RBP14.95□□□□□ -0.02
VPS35-210ENST00000568784 OLFML2BQ68BL8 750 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 OR52E8Q6IFG1 317 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 EFCAB12Q6NXP0 572 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 PID1Q7Z2X4 250 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 MZB1Q8WU39 189 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 PPP2R3CQ969Q6 453 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 MARK4Q96L34 752 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 FERMT1Q9BQL6 677 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 SDCBP2Q9H190 292 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 RPS6KL1Q9Y6S9 549 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 CAPN8A6NHC0 703 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 CHADO15335 359 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms