RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 RAD54BQ9Y620 910 aa15.7■□□□□ 0.1
CLN3-236ENST00000568558 C1QTNF9BB2RNN3 333 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 GFRA2O00451 464 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 ZBTB24O43167 697 aaPredicted RBP15.69■□□□□ 0.1
CLN3-236ENST00000568558 ZNF217O75362 1048 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 C1QTNF9P0C862 333 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 RALAP11233 206 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 RPL13P26373 211 aaKnown RBP15.69■□□□□ 0.1
CLN3-236ENST00000568558 GTF2H1P32780 548 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 MCCD1P59942 119 aaPredicted RBP15.69■□□□□ 0.1
CLN3-236ENST00000568558 ADAM9Q13443 819 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 ZNF394Q53GI3 561 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 KRT39Q6A163 491 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 UNQ6494/PRO21346Q6UXR6 183 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 KRBA2Q6ZNG9 492 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 SLC41A1Q8IVJ1 513 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 BHMTQ93088 406 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 ERLEC1Q96DZ1 483 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 CAPN10Q9HC96 672 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 CD93Q9NPY3 652 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 FSCN3Q9NQT6 498 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 CACNA2D2Q9NY47 1150 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 ZNF510Q9Y2H8 683 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 AKAP13Q12802 2813 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 IGF2RP11717 2491 aa15.69■□□□□ 0.1
CLN3-236ENST00000568558 WASH3PC4AMC7 463 aa15.68■□□□□ 0.1
CLN3-236ENST00000568558 TOP3BO95985 862 aaKnown RBP15.68■□□□□ 0.1
CLN3-236ENST00000568558 PENKP01210 267 aaPredicted RBP15.68■□□□□ 0.1
CLN3-236ENST00000568558 KLKB1P03952 638 aa15.68■□□□□ 0.1
CLN3-236ENST00000568558 SERPINF2P08697 491 aa15.68■□□□□ 0.1
CLN3-236ENST00000568558 SPINK2P20155 84 aa15.68■□□□□ 0.1
CLN3-236ENST00000568558 SEMA3BQ13214 749 aa15.68■□□□□ 0.1
CLN3-236ENST00000568558 RABEPKQ7Z6M1 372 aa15.68■□□□□ 0.1
CLN3-236ENST00000568558 PIP4P1Q86T03 277 aa15.68■□□□□ 0.1
CLN3-236ENST00000568558 SEMA4DQ92854 862 aa15.68■□□□□ 0.1
CLN3-236ENST00000568558 FAXDC2Q96IV6 333 aa15.68■□□□□ 0.1
CLN3-236ENST00000568558 MRGPRX1Q96LB2 322 aa15.68■□□□□ 0.1
CLN3-236ENST00000568558 CDK5RAP1Q96SZ6 601 aaKnown RBP15.68■□□□□ 0.1
CLN3-236ENST00000568558 ADAM33Q9BZ11 813 aa15.68■□□□□ 0.1
CLN3-236ENST00000568558 SLC6A17Q9H1V8 727 aa15.68■□□□□ 0.1
CLN3-236ENST00000568558 SLC32A1Q9H598 525 aa15.68■□□□□ 0.1
CLN3-236ENST00000568558 RASAL2Q9UJF2 1139 aa15.68■□□□□ 0.1
CLN3-236ENST00000568558 SLC27A6Q9Y2P4 619 aa15.68■□□□□ 0.1
CLN3-236ENST00000568558 MUC22E2RYF6 1773 aaPredicted RBP15.67■□□□□ 0.1
CLN3-236ENST00000568558 UPK3BL1B0FP48 263 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 UPK3BL2E5RIL1 263 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 CHKAP35790 457 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 MXI1P50539 228 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 ATXN3P54252 364 aaPredicted RBP15.67■□□□□ 0.1
CLN3-236ENST00000568558 MFAP3P55082 362 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 COG7P83436 770 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 GFPT1Q06210 699 aaPredicted RBP15.67■□□□□ 0.1
CLN3-236ENST00000568558 EFEMP1Q12805 493 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 EDRF1Q3B7T1 1238 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 FYB2Q5VWT5 728 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 TTC39CQ8N584 583 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 TRIML1Q8N9V2 468 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 SLC4A11Q8NBS3 891 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 FBXL13Q8NEE6 735 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 TMEM176AQ96HP8 235 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 HEXIM2Q96MH2 286 aaKnown RBP15.67■□□□□ 0.1
CLN3-236ENST00000568558 HSPA12BQ96MM6 686 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 GTPBP2Q9BX10 602 aaKnown RBP15.67■□□□□ 0.1
CLN3-236ENST00000568558 TMEM121BQ9BXQ6 578 aaPredicted RBP15.67■□□□□ 0.1
CLN3-236ENST00000568558 DCLK3Q9C098 648 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 GOLPH3LQ9H4A5 285 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 CISHQ9NSE2 258 aa15.67■□□□□ 0.1
CLN3-236ENST00000568558 A0A1W2PQ27 194 aa15.66■□□□□ 0.1
CLN3-236ENST00000568558 A0A1W2PQ64 194 aa15.66■□□□□ 0.1
CLN3-236ENST00000568558 A0A1W2PQD8 194 aa15.66■□□□□ 0.1
CLN3-236ENST00000568558 HMBSP08397 361 aa15.66■□□□□ 0.1
CLN3-236ENST00000568558 CORO1AP31146 461 aaKnown RBP15.66■□□□□ 0.1
CLN3-236ENST00000568558 RAD23BP54727 409 aa15.66■□□□□ 0.1
CLN3-236ENST00000568558 GEN1Q17RS7 908 aa15.66■□□□□ 0.1
CLN3-236ENST00000568558 RAB41Q5JT25 222 aa15.66■□□□□ 0.1
CLN3-236ENST00000568558 ARHGAP17Q68EM7 881 aa15.66■□□□□ 0.1
CLN3-236ENST00000568558 KIAA1324Q6UXG2 1013 aaKnown RBP15.66■□□□□ 0.1
CLN3-236ENST00000568558 PIGZQ86VD9 579 aa15.66■□□□□ 0.1
CLN3-236ENST00000568558 HDDC3Q8N4P3 179 aa15.66■□□□□ 0.1
CLN3-236ENST00000568558 ZNF419Q96HQ0 510 aaPredicted RBP15.66■□□□□ 0.1
CLN3-236ENST00000568558 ARID3AQ99856 593 aa15.66■□□□□ 0.1
CLN3-236ENST00000568558 SCNM1Q9BWG6 230 aa15.66■□□□□ 0.1
CLN3-236ENST00000568558 UBXN6Q9BZV1 441 aa15.66■□□□□ 0.1
CLN3-236ENST00000568558 FAM124BQ9H5Z6 455 aaPredicted RBP15.66■□□□□ 0.1
CLN3-236ENST00000568558 RAB20Q9NX57 234 aa15.66■□□□□ 0.1
CLN3-236ENST00000568558 STON1Q9Y6Q2 735 aa15.66■□□□□ 0.1
CLN3-236ENST00000568558 ARHGAP33O14559 1287 aa15.65■□□□□ 0.1
CLN3-236ENST00000568558 OPHN1O60890 802 aa15.65■□□□□ 0.1
CLN3-236ENST00000568558 NDUFS2O75306 463 aa15.65■□□□□ 0.1
CLN3-236ENST00000568558 ZNF202O95125 648 aa15.65■□□□□ 0.1
CLN3-236ENST00000568558 IL12RB1P42701 662 aa15.65■□□□□ 0.1
CLN3-236ENST00000568558 ENPP2Q13822 863 aa15.65■□□□□ 0.1
CLN3-236ENST00000568558 STARD3Q14849 445 aa15.65■□□□□ 0.1
CLN3-236ENST00000568558 FUT11Q495W5 492 aa15.65■□□□□ 0.1
CLN3-236ENST00000568558 METTL3Q86U44 580 aaKnown RBP15.65■□□□□ 0.1
CLN3-236ENST00000568558 SMYD4Q8IYR2 804 aaPredicted RBP15.65■□□□□ 0.1
CLN3-236ENST00000568558 RGL4Q8IZJ4 473 aa15.65■□□□□ 0.1
CLN3-236ENST00000568558 ARHGAP18Q8N392 663 aa15.65■□□□□ 0.1
CLN3-236ENST00000568558 CPXM2Q8N436 756 aa15.65■□□□□ 0.1
CLN3-236ENST00000568558 MINDY1Q8N5J2 469 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms