RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SH3PXD2AQ5TCZ1 1133 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 SDE2Q6IQ49 451 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 KIAA1211LQ6NV74 962 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 ZC3H3Q8IXZ2 948 aaKnown RBP17.98■□□□□ 0.47
CLN3-216ENST00000565316 SMYD4Q8IYR2 804 aaPredicted RBP17.98■□□□□ 0.47
CLN3-216ENST00000565316 CHPFQ8IZ52 775 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 ANKRD52Q8NB46 1076 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 IPO4Q8TEX9 1081 aaKnown RBP17.98■□□□□ 0.47
CLN3-216ENST00000565316 EEF2KMTQ96G04 330 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 ARID3AQ99856 593 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 NUSAP1Q9BXS6 441 aaKnown RBP17.98■□□□□ 0.47
CLN3-216ENST00000565316 SLC27A6Q9Y2P4 619 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 IGHV1OR15-9A0A0B4J2B8 117 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 ZNF217O75362 1048 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 EPB41P11171 864 aaKnown RBP17.98■□□□□ 0.47
CLN3-216ENST00000565316 CEACAM1P13688 526 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 NDUFV2P19404 249 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 RPL6Q02878 288 aaKnown RBP17.98■□□□□ 0.47
CLN3-216ENST00000565316 FYB2Q5VWT5 728 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 ARHGAP18Q8N392 663 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 TATDN2Q93075 761 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 CCDC34Q96HJ3 373 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 DCLK3Q9C098 648 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 WASF3Q9UPY6 502 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 COQ4Q9Y3A0 265 aa17.98■□□□□ 0.47
CLN3-216ENST00000565316 SLC16A3O15427 465 aaKnown RBP17.97■□□□□ 0.47
CLN3-216ENST00000565316 ZBTB24O43167 697 aaPredicted RBP17.97■□□□□ 0.47
CLN3-216ENST00000565316 CHKAP35790 457 aa17.97■□□□□ 0.47
CLN3-216ENST00000565316 PRCPP42785 496 aa17.97■□□□□ 0.47
CLN3-216ENST00000565316 EFEMP1Q12805 493 aa17.97■□□□□ 0.47
CLN3-216ENST00000565316 PNOCQ13519 176 aa17.97■□□□□ 0.47
CLN3-216ENST00000565316 PM20D1Q6GTS8 502 aa17.97■□□□□ 0.47
CLN3-216ENST00000565316 PIGZQ86VD9 579 aa17.97■□□□□ 0.47
CLN3-216ENST00000565316 FMR1NBQ8N0W7 255 aaPredicted RBP17.97■□□□□ 0.47
CLN3-216ENST00000565316 CEP76Q8TAP6 659 aa17.97■□□□□ 0.47
CLN3-216ENST00000565316 GDPD2Q9HCC8 539 aa17.97■□□□□ 0.47
CLN3-216ENST00000565316 RMND1Q9NWS8 449 aa17.97■□□□□ 0.47
CLN3-216ENST00000565316 CACNA2D2Q9NY47 1150 aa17.97■□□□□ 0.47
CLN3-216ENST00000565316 PLK2Q9NYY3 685 aa17.97■□□□□ 0.47
CLN3-216ENST00000565316 ASCC3Q8N3C0 2202 aaKnown RBP17.96■□□□□ 0.47
CLN3-216ENST00000565316 ZFHX4Q86UP3 3567 aa17.96■□□□□ 0.47
CLN3-216ENST00000565316 UPK3BL1B0FP48 263 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 UPK3BL2E5RIL1 263 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 NPC1O15118 1278 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 ENGP17813 658 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 MFAP3P55082 362 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 ZNF252P-AS1Q0IIN9 211 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 ENPP2Q13822 863 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 DUOXA1Q1HG43 343 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 CBWD6Q4V339 395 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 CBWD3Q5JTY5 395 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 CBWD5Q5RIA9 395 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 BHMTQ93088 406 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 MRGPRX1Q96LB2 322 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 CAPN10Q9HC96 672 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 MARCH2Q9P0N8 246 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 RASAL2Q9UJF2 1139 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 AGO1Q9UL18 857 aaKnown RBP17.96■□□□□ 0.46
CLN3-216ENST00000565316 SLC6A14Q9UN76 642 aa17.96■□□□□ 0.46
CLN3-216ENST00000565316 ZBED1O96006 694 aa17.95■□□□□ 0.46
CLN3-216ENST00000565316 SERPINF2P08697 491 aa17.95■□□□□ 0.46
CLN3-216ENST00000565316 CORO1AP31146 461 aaKnown RBP17.95■□□□□ 0.46
CLN3-216ENST00000565316 SLC8A3P57103 927 aa17.95■□□□□ 0.46
CLN3-216ENST00000565316 YWHAGP61981 247 aaKnown RBP eCLIP17.95■□□□□ 0.46
CLN3-216ENST00000565316 ZNF33AQ06730 810 aa17.95■□□□□ 0.46
CLN3-216ENST00000565316 UAP1L1Q3KQV9 507 aa17.95■□□□□ 0.46
CLN3-216ENST00000565316 ZNF658Q5TYW1 1059 aaPredicted RBP17.95■□□□□ 0.46
CLN3-216ENST00000565316 BHLHA9Q7RTU4 235 aa17.95■□□□□ 0.46
CLN3-216ENST00000565316 RABEPKQ7Z6M1 372 aa17.95■□□□□ 0.46
CLN3-216ENST00000565316 PIP4P1Q86T03 277 aa17.95■□□□□ 0.46
CLN3-216ENST00000565316 METTL3Q86U44 580 aaKnown RBP17.95■□□□□ 0.46
CLN3-216ENST00000565316 SLC41A1Q8IVJ1 513 aa17.95■□□□□ 0.46
CLN3-216ENST00000565316 FAM217AQ8IXS0 508 aa17.95■□□□□ 0.46
CLN3-216ENST00000565316 CPXM2Q8N436 756 aa17.95■□□□□ 0.46
CLN3-216ENST00000565316 SPATA20Q8TB22 786 aa17.95■□□□□ 0.46
CLN3-216ENST00000565316 ZNF419Q96HQ0 510 aaPredicted RBP17.95■□□□□ 0.46
CLN3-216ENST00000565316 PIWIL1Q96J94 861 aaKnown RBP17.95■□□□□ 0.46
CLN3-216ENST00000565316 GSDMAQ96QA5 445 aa17.95■□□□□ 0.46
CLN3-216ENST00000565316 THAP10Q9P2Z0 257 aaPredicted RBP17.95■□□□□ 0.46
CLN3-216ENST00000565316 CYP8B1Q9UNU6 501 aa17.95■□□□□ 0.46
CLN3-216ENST00000565316 RAD54BQ9Y620 910 aa17.95■□□□□ 0.46
CLN3-216ENST00000565316 ATXN2Q99700 1313 aaKnown RBP17.95■□□□□ 0.46
CLN3-216ENST00000565316 PI4KAP42356 2102 aa17.94■□□□□ 0.46
CLN3-216ENST00000565316 AKAP13Q12802 2813 aa17.94■□□□□ 0.46
CLN3-216ENST00000565316 WASH3PC4AMC7 463 aa17.94■□□□□ 0.46
CLN3-216ENST00000565316 MAPK8P45983 427 aa17.94■□□□□ 0.46
CLN3-216ENST00000565316 TKTL1P51854 596 aa17.94■□□□□ 0.46
CLN3-216ENST00000565316 ZNF132P52740 706 aa17.94■□□□□ 0.46
CLN3-216ENST00000565316 FKBP3Q00688 224 aaKnown RBP17.94■□□□□ 0.46
CLN3-216ENST00000565316 CUL2Q13617 745 aa17.94■□□□□ 0.46
CLN3-216ENST00000565316 ANKRD40Q6AI12 368 aa17.94■□□□□ 0.46
CLN3-216ENST00000565316 DEFB119Q8N690 84 aa17.94■□□□□ 0.46
CLN3-216ENST00000565316 UBR7Q8N806 425 aa17.94■□□□□ 0.46
CLN3-216ENST00000565316 RBBP8NLQ8NC74 664 aaPredicted RBP17.94■□□□□ 0.46
CLN3-216ENST00000565316 ENGASEQ8NFI3 743 aa17.94■□□□□ 0.46
CLN3-216ENST00000565316 STRIP2Q9ULQ0 834 aa17.94■□□□□ 0.46
CLN3-216ENST00000565316 STON1Q9Y6Q2 735 aa17.94■□□□□ 0.46
CLN3-216ENST00000565316 ZZEF1O43149 2961 aa17.94■□□□□ 0.46
CLN3-216ENST00000565316 IGF2RP11717 2491 aa17.93■□□□□ 0.46
CLN3-216ENST00000565316 CFAP47Q6ZTR5 3102 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms