RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 WHAMMP3Q1A5X7 153 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 BRMS1LQ5PSV4 323 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 OTUD1Q5VV17 481 aaPredicted RBP13.34□□□□□ -0.27
CLK3-214ENST00000564096 DAB2IPQ5VWQ8 1189 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 BNIPLQ7Z465 357 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 FAM131BQ86XD5 332 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 TMC8Q8IU68 726 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 CCDC50Q8IVM0 306 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 MAP7D3Q8IWC1 876 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 EFHBQ8N7U6 833 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 EXD1Q8NHP7 514 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 ADAM32Q8TC27 787 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 KRT35Q92764 455 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 NTAN1Q96AB6 310 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 PSMB7Q99436 277 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 NAP1L3Q99457 506 aaPredicted RBP13.34□□□□□ -0.27
CLK3-214ENST00000564096 PRKD2Q9BZL6 878 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 TRPC7Q9HCX4 862 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.34□□□□□ -0.27
CLK3-214ENST00000564096 RNF14Q9UBS8 474 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 PCSK1NQ9UHG2 260 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 TLR6Q9Y2C9 796 aa13.34□□□□□ -0.27
CLK3-214ENST00000564096 LRRD1A4D1F6 860 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 RFXAPO00287 272 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 ZNF197O14709 1029 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 FANCGO15287 622 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 TADA3O75528 432 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 RFPL2O75678 378 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 PAFAH1B1P43034 410 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 MARCKSL1P49006 195 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 ZNF135P52742 658 aaPredicted RBP13.33□□□□□ -0.28
CLK3-214ENST00000564096 EPHA5P54756 1037 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 COPS2P61201 443 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 SCAPQ12770 1279 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 PPP2R5DQ14738 602 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 TRIP4Q15650 581 aaPredicted RBP13.33□□□□□ -0.28
CLK3-214ENST00000564096 SMTNL2Q2TAL5 461 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 TCEAL5Q5H9L2 206 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 ACBD5Q5T8D3 534 aaPredicted RBP13.33□□□□□ -0.28
CLK3-214ENST00000564096 SH3PXD2AQ5TCZ1 1133 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 NUGGCQ68CJ6 796 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 CPNE8Q86YQ8 564 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 MIB1Q86YT6 1006 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 SMG7Q92540 1137 aaKnown RBP13.33□□□□□ -0.28
CLK3-214ENST00000564096 HSPH1Q92598 858 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 ALG3Q92685 438 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 GAS2L1Q99501 681 aaPredicted RBP13.33□□□□□ -0.28
CLK3-214ENST00000564096 SNRNP25Q9BV90 132 aaKnown RBP13.33□□□□□ -0.28
CLK3-214ENST00000564096 ATXN3LQ9H3M9 355 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 PRDM12Q9H4Q4 367 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 CCSER2Q9H7U1 834 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 ZNF334Q9HCZ1 680 aaPredicted RBP13.33□□□□□ -0.28
CLK3-214ENST00000564096 PIGVQ9NUD9 493 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 OSER1Q9NX31 292 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 SLC12A6Q9UHW9 1150 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 AP4E1Q9UPM8 1137 aa13.33□□□□□ -0.28
CLK3-214ENST00000564096 HBS1LQ9Y450 684 aaKnown RBP13.33□□□□□ -0.28
CLK3-214ENST00000564096 TRAV19A0A0A6YYK7 116 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 CCDC195A0A1B0GUA6 201 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 SLC12A8A0AV02 714 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 SOBPA7XYQ1 873 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 PGRMC1O00264 195 aaKnown RBP13.32□□□□□ -0.28
CLK3-214ENST00000564096 MSI1O43347 362 aaKnown RBP13.32□□□□□ -0.28
CLK3-214ENST00000564096 CEP104O60308 925 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 ZRANB2O95218 330 aaKnown RBP eCLIP13.32□□□□□ -0.28
CLK3-214ENST00000564096 OAS1P00973 400 aaKnown RBP13.32□□□□□ -0.28
CLK3-214ENST00000564096 RHOP08100 348 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 HOXB8P17481 243 aaPredicted RBP13.32□□□□□ -0.28
CLK3-214ENST00000564096 TFE3P19532 575 aaPredicted RBP13.32□□□□□ -0.28
CLK3-214ENST00000564096 CXCR3P49682 368 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 TBX4P57082 545 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 PITX1P78337 314 aaPredicted RBP13.32□□□□□ -0.28
CLK3-214ENST00000564096 COG7P83436 770 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 RING1Q06587 406 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 PDK2Q15119 407 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 ERMARDQ5T6L9 678 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 VSIG1Q86XK7 387 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 RCOR2Q8IZ40 523 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 ARFGAP1Q8N6T3 406 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 KCTD6Q8NC69 237 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 MNS1Q8NEH6 495 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 PLD4Q96BZ4 506 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 IGFLR1Q9H665 355 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 WDCPQ9H6R7 721 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 IL21Q9HBE4 155 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 WDR6Q9NNW5 1121 aaKnown RBP13.32□□□□□ -0.28
CLK3-214ENST00000564096 RRAGDQ9NQL2 400 aaPredicted RBP13.32□□□□□ -0.28
CLK3-214ENST00000564096 KLHL11Q9NVR0 708 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.32□□□□□ -0.28
CLK3-214ENST00000564096 SFMBT1Q9UHJ3 866 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 CDC23Q9UJX2 597 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 MRFAP1Q9Y605 127 aa13.32□□□□□ -0.28
CLK3-214ENST00000564096 GOLGA6L10A0A0M3HER8 536 aa13.31□□□□□ -0.28
CLK3-214ENST00000564096 A0A1W2PRU2 124 aa13.31□□□□□ -0.28
CLK3-214ENST00000564096 COCHO43405 550 aa13.31□□□□□ -0.28
CLK3-214ENST00000564096 PAPLNO95428 1278 aa13.31□□□□□ -0.28
CLK3-214ENST00000564096 F11P03951 625 aa13.31□□□□□ -0.28
CLK3-214ENST00000564096 CKMP06732 381 aa13.31□□□□□ -0.28
CLK3-214ENST00000564096 RARAP10276 462 aa13.31□□□□□ -0.28
CLK3-214ENST00000564096 MBL2P11226 248 aaPredicted RBP13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 113.2 ms