RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 TCERG1LQ5VWI1 586 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 TPGS1Q6ZTW0 290 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 MIB1Q86YT6 1006 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 CCDC150Q8NCX0 1101 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 OR2I1PQ8NGU4 316 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 OTUB2Q96DC9 234 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 CYLDQ9NQC7 956 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 CALCOCO1Q9P1Z2 691 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 DEC1Q9P2X7 70 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 NAGPAQ9UK23 515 aa19.99■□□□□ 0.79
VPS35-202ENST00000561713 SERPINF2P08697 491 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 RARGP13631 454 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 TRIM21P19474 475 aaKnown RBP19.98■□□□□ 0.79
VPS35-202ENST00000561713 HOXD12P35452 270 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 ATXN3P54252 364 aaPredicted RBP19.98■□□□□ 0.79
VPS35-202ENST00000561713 RING1Q06587 406 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 CBWD6Q4V339 395 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 CBWD3Q5JTY5 395 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 CBWD5Q5RIA9 395 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 C10orf120Q5SQS8 335 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 BTBD8Q5XKL5 378 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 SCD5Q86SK9 330 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 HDDC3Q8N4P3 179 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 TERB1Q8NA31 727 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 FBXL13Q8NEE6 735 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 CEP76Q8TAP6 659 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 TATDN2Q93075 761 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 CAPN10Q9HC96 672 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 CISHQ9NSE2 258 aa19.98■□□□□ 0.79
VPS35-202ENST00000561713 DNAJC17Q9NVM6 304 aaKnown RBP19.98■□□□□ 0.79
VPS35-202ENST00000561713 MTPAPQ9NVV4 582 aaKnown RBP eCLIP19.98■□□□□ 0.79
VPS35-202ENST00000561713 A0A1W2PQF6 199 aa19.97■□□□□ 0.79
VPS35-202ENST00000561713 CETN3O15182 167 aa19.97■□□□□ 0.79
VPS35-202ENST00000561713 ATP5C1P36542 298 aaKnown RBP19.97■□□□□ 0.79
VPS35-202ENST00000561713 ZNF33AQ06730 810 aa19.97■□□□□ 0.79
VPS35-202ENST00000561713 EGFLAMQ63HQ2 1017 aa19.97■□□□□ 0.79
VPS35-202ENST00000561713 TOGARAM2Q6ZUX3 1019 aa19.97■□□□□ 0.79
VPS35-202ENST00000561713 TRMT11Q7Z4G4 463 aaKnown RBP19.97■□□□□ 0.79
VPS35-202ENST00000561713 SLC4A11Q8NBS3 891 aa19.97■□□□□ 0.79
VPS35-202ENST00000561713 KCNV2Q8TDN2 545 aa19.97■□□□□ 0.79
VPS35-202ENST00000561713 P2RY11Q96G91 374 aa19.97■□□□□ 0.79
VPS35-202ENST00000561713 HEXIM2Q96MH2 286 aaKnown RBP19.97■□□□□ 0.79
VPS35-202ENST00000561713 PCDHA5Q9Y5H7 936 aa19.97■□□□□ 0.79
VPS35-202ENST00000561713 OPHN1O60890 802 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 HMBSP08397 361 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 HOXB2P14652 356 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 GTF2H1P32780 548 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 KIF11P52732 1056 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 RAD23BP54727 409 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 ENPEPQ07075 957 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 ISM2Q6H9L7 571 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 GRAMD4Q6IC98 578 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 LRSAM1Q6UWE0 723 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 SLC36A4Q6YBV0 504 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 SLC41A1Q8IVJ1 513 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 CHCHD4Q8N4Q1 142 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 MINDY1Q8N5J2 469 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 ACOX2Q99424 681 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 BBS2Q9BXC9 721 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 DUSP16Q9BY84 665 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 PNPLA8Q9NP80 782 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 RAB20Q9NX57 234 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 PLK2Q9NYY3 685 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 RASAL2Q9UJF2 1139 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 LSM7Q9UK45 103 aaKnown RBP19.96■□□□□ 0.79
VPS35-202ENST00000561713 LOC400499M0QZD8 3231 aa19.96■□□□□ 0.79
VPS35-202ENST00000561713 ANKRD11Q6UB99 2663 aaPredicted RBP19.96■□□□□ 0.79
VPS35-202ENST00000561713 PCDH15Q96QU1 1955 aa19.95■□□□□ 0.78
VPS35-202ENST00000561713 IGHV1OR15-9A0A0B4J2B8 117 aa19.95■□□□□ 0.78
VPS35-202ENST00000561713 TULP2O00295 520 aa19.95■□□□□ 0.78
VPS35-202ENST00000561713 ARHGAP33O14559 1287 aa19.95■□□□□ 0.78
VPS35-202ENST00000561713 CD59P13987 128 aa19.95■□□□□ 0.78
VPS35-202ENST00000561713 TYRP14679 529 aa19.95■□□□□ 0.78
VPS35-202ENST00000561713 NTSR1P30989 418 aa19.95■□□□□ 0.78
VPS35-202ENST00000561713 GOLGA7BQ2TAP0 167 aa19.95■□□□□ 0.78
VPS35-202ENST00000561713 PREPLQ4J6C6 727 aaPredicted RBP19.95■□□□□ 0.78
VPS35-202ENST00000561713 ZNF658Q5TYW1 1059 aaPredicted RBP19.95■□□□□ 0.78
VPS35-202ENST00000561713 ANKRD40Q6AI12 368 aa19.95■□□□□ 0.78
VPS35-202ENST00000561713 HTR3DQ70Z44 454 aa19.95■□□□□ 0.78
VPS35-202ENST00000561713 CCDC186Q7Z3E2 898 aa19.95■□□□□ 0.78
VPS35-202ENST00000561713 TSG101Q99816 390 aa19.95■□□□□ 0.78
VPS35-202ENST00000561713 CD248Q9HCU0 757 aa19.95■□□□□ 0.78
VPS35-202ENST00000561713 RMND1Q9NWS8 449 aa19.95■□□□□ 0.78
VPS35-202ENST00000561713 CYP8B1Q9UNU6 501 aa19.95■□□□□ 0.78
VPS35-202ENST00000561713 LHX6Q9UPM6 363 aa19.95■□□□□ 0.78
VPS35-202ENST00000561713 CELSR3Q9NYQ7 3312 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 GOLGA6L4A6NEF3 574 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 TAF4O00268 1085 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 CACNG3O60359 315 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 STC2O76061 302 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 NDUFV2P19404 249 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 GOLGA8FQ08AF8 430 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 GOLGA8DPQ0D2H9 430 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 EFEMP1Q12805 493 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 LRMPQ12912 555 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 Q6ZNB5 142 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 NUDT18Q6ZVK8 323 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 PIGZQ86VD9 579 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 ENGASEQ8NFI3 743 aa19.94■□□□□ 0.78
VPS35-202ENST00000561713 NDRG1Q92597 394 aaKnown RBP19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms