RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 TPGS1Q6ZTW0 290 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 DEFB119Q8N690 84 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 CADM4Q8NFZ8 388 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 SNX21Q969T3 373 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 CYFIP2Q96F07 1278 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 PAGE5Q96GU1 130 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 UBXN6Q9BZV1 441 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 ZDHHC5Q9C0B5 715 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 NACA2Q9H009 215 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 APOBEC3GQ9HC16 384 aaKnown RBP17.3■□□□□ 0.36
CLN3-208ENST00000561505 CD93Q9NPY3 652 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 THAP10Q9P2Z0 257 aaPredicted RBP17.3■□□□□ 0.36
CLN3-208ENST00000561505 SERTAD1Q9UHV2 236 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 CYP8B1Q9UNU6 501 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 ZNF510Q9Y2H8 683 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 WDFY3Q8IZQ1 3526 aa17.3■□□□□ 0.36
CLN3-208ENST00000561505 ITPR1Q14643 2758 aa17.29■□□□□ 0.36
CLN3-208ENST00000561505 BAHCC1Q9P281 2608 aa17.29■□□□□ 0.36
CLN3-208ENST00000561505 WASH3PC4AMC7 463 aa17.29■□□□□ 0.36
CLN3-208ENST00000561505 TAF4O00268 1085 aa17.29■□□□□ 0.36
CLN3-208ENST00000561505 ZBTB24O43167 697 aaPredicted RBP17.29■□□□□ 0.36
CLN3-208ENST00000561505 CILPO75339 1184 aa17.29■□□□□ 0.36
CLN3-208ENST00000561505 ZSCAN22P10073 491 aaPredicted RBP17.29■□□□□ 0.36
CLN3-208ENST00000561505 KMT5BQ4FZB7 885 aa17.29■□□□□ 0.36
CLN3-208ENST00000561505 DBX2Q6ZNG2 339 aa17.29■□□□□ 0.36
CLN3-208ENST00000561505 GLRX5Q86SX6 157 aa17.29■□□□□ 0.36
CLN3-208ENST00000561505 FAM217AQ8IXS0 508 aa17.29■□□□□ 0.36
CLN3-208ENST00000561505 GRAMD1CQ8IYS0 662 aa17.29■□□□□ 0.36
CLN3-208ENST00000561505 ADAMTS14Q8WXS8 1223 aa17.29■□□□□ 0.36
CLN3-208ENST00000561505 ZCCHC14Q8WYQ9 949 aaKnown RBP17.29■□□□□ 0.36
CLN3-208ENST00000561505 PIWIL1Q96J94 861 aaKnown RBP17.29■□□□□ 0.36
CLN3-208ENST00000561505 GTPBP2Q9BX10 602 aaKnown RBP17.29■□□□□ 0.36
CLN3-208ENST00000561505 NT5C1AQ9BXI3 368 aa17.29■□□□□ 0.36
CLN3-208ENST00000561505 DUSP16Q9BY84 665 aa17.29■□□□□ 0.36
CLN3-208ENST00000561505 FOXD4L1Q9NU39 408 aa17.29■□□□□ 0.36
CLN3-208ENST00000561505 CACNA2D2Q9NY47 1150 aa17.29■□□□□ 0.36
CLN3-208ENST00000561505 STON1Q9Y6Q2 735 aa17.29■□□□□ 0.36
CLN3-208ENST00000561505 ANKRD11Q6UB99 2663 aaPredicted RBP17.28■□□□□ 0.36
CLN3-208ENST00000561505 CBFA2T3O75081 653 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 F13A1P00488 732 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 ADORA2BP29275 332 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 CD6P30203 668 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 RDXP35241 583 aaKnown RBP17.28■□□□□ 0.36
CLN3-208ENST00000561505 CHKAP35790 457 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 MFAP3P55082 362 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 COG7P83436 770 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 FUT11Q495W5 492 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 SYCP2LQ5T4T6 812 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 LRSAM1Q6UWE0 723 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 CHCHD4Q8N4Q1 142 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 OR2I1PQ8NGU4 316 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 C1orf216Q8TAB5 229 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 CDK5RAP1Q96SZ6 601 aaKnown RBP17.28■□□□□ 0.36
CLN3-208ENST00000561505 MKRN2Q9H000 416 aaKnown RBP17.28■□□□□ 0.36
CLN3-208ENST00000561505 SLC6A17Q9H1V8 727 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 HPSEQ9Y251 543 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 RAD54BQ9Y620 910 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 FREM2Q5SZK8 3169 aa17.28■□□□□ 0.36
CLN3-208ENST00000561505 MDM4O15151 490 aa17.27■□□□□ 0.36
CLN3-208ENST00000561505 ZNF883P0CG24 379 aa17.27■□□□□ 0.36
CLN3-208ENST00000561505 ME1P48163 572 aa17.27■□□□□ 0.36
CLN3-208ENST00000561505 VAMP7P51809 220 aa17.27■□□□□ 0.36
CLN3-208ENST00000561505 PPP3CAQ08209 521 aa17.27■□□□□ 0.36
CLN3-208ENST00000561505 TRIP6Q15654 476 aaKnown RBP17.27■□□□□ 0.36
CLN3-208ENST00000561505 RAB41Q5JT25 222 aa17.27■□□□□ 0.36
CLN3-208ENST00000561505 WDR45BQ5MNZ6 344 aa17.27■□□□□ 0.36
CLN3-208ENST00000561505 TADA2BQ86TJ2 420 aa17.27■□□□□ 0.36
CLN3-208ENST00000561505 CEP57L1Q8IYX8 460 aa17.27■□□□□ 0.36
CLN3-208ENST00000561505 CPXM2Q8N436 756 aa17.27■□□□□ 0.36
CLN3-208ENST00000561505 SLC2A11Q9BYW1 496 aa17.27■□□□□ 0.36
CLN3-208ENST00000561505 DCLK3Q9C098 648 aa17.27■□□□□ 0.36
CLN3-208ENST00000561505 EXOC1Q9NV70 894 aa17.27■□□□□ 0.36
CLN3-208ENST00000561505 USP25Q9UHP3 1055 aa17.27■□□□□ 0.36
CLN3-208ENST00000561505 NUDT5Q9UKK9 219 aa17.27■□□□□ 0.36
CLN3-208ENST00000561505 NBEAQ8NFP9 2946 aa17.27■□□□□ 0.35
CLN3-208ENST00000561505 FAM237AA0A1B0GTK4 181 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 A0A1B0GTW7 788 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 KCNJ18B7U540 433 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 SH3BP5O60239 455 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 DKK1O94907 266 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 GNSP15586 552 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 TRIM21P19474 475 aaKnown RBP17.26■□□□□ 0.35
CLN3-208ENST00000561505 IL12RB1P42701 662 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 E2F5Q15329 346 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 GEN1Q17RS7 908 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 PLEKHG6Q3KR16 790 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 C10orf120Q5SQS8 335 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 PPP1R26Q5T8A7 1209 aaPredicted RBP17.26■□□□□ 0.35
CLN3-208ENST00000561505 INTS8Q75QN2 995 aaKnown RBP17.26■□□□□ 0.35
CLN3-208ENST00000561505 PROSER1Q86XN7 944 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 BAHD1Q8TBE0 780 aaPredicted RBP17.26■□□□□ 0.35
CLN3-208ENST00000561505 TAS1R2Q8TE23 839 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 NIF3L1Q9GZT8 377 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 PCED1AQ9H1Q7 454 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 PRDM16Q9HAZ2 1276 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 PLK2Q9NYY3 685 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 KIAA1522Q9P206 1035 aaPredicted RBP17.26■□□□□ 0.35
CLN3-208ENST00000561505 NAGPAQ9UK23 515 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 CFAP45Q9UL16 551 aa17.26■□□□□ 0.35
CLN3-208ENST00000561505 FRMD4BQ9Y2L6 1034 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms