RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 CBWD6Q4V339 395 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 CBWD3Q5JTY5 395 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 CBWD5Q5RIA9 395 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 C1orf220Q5T0J3 134 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 SFMBT2Q5VUG0 894 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 E4F1Q66K89 784 aaPredicted RBP14.76□□□□□ -0.05
LDLR-213ENST00000560502 DPY19L2P1Q6NXN4 242 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 RRAGAQ7L523 313 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 C12orf40Q86WS4 652 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 TXLNBQ8N3L3 684 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 CCDC33Q8N5R6 958 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 SPAG5Q96R06 1193 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 MMS19Q96T76 1030 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 CGRRF1Q99675 332 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 CRACR2AQ9BSW2 395 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 ZNF518BQ9C0D4 1074 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 ELOVL4Q9GZR5 314 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 DPEP3Q9H4B8 488 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 SIX2Q9NPC8 291 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 AIPL1Q9NZN9 384 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 APEX2Q9UBZ4 518 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 WASF3Q9UPY6 502 aa14.76□□□□□ -0.05
LDLR-213ENST00000560502 LRRC53A6NM62 1247 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 LRRIQ3A6PVS8 624 aaPredicted RBP14.75□□□□□ -0.05
LDLR-213ENST00000560502 PATE3B3GLJ2 98 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 CDX4O14627 284 aaPredicted RBP14.75□□□□□ -0.05
LDLR-213ENST00000560502 GIPC1O14908 333 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 KHNYNO15037 678 aaKnown RBP14.75□□□□□ -0.05
LDLR-213ENST00000560502 PTPN1P18031 435 aaKnown RBP14.75□□□□□ -0.05
LDLR-213ENST00000560502 GNL1P36915 607 aaPredicted RBP14.75□□□□□ -0.05
LDLR-213ENST00000560502 KIR2DL1P43626 348 aaPredicted RBP14.75□□□□□ -0.05
LDLR-213ENST00000560502 SLC6A11P48066 632 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 NOVA1P51513 510 aaKnown RBP14.75□□□□□ -0.05
LDLR-213ENST00000560502 PPP3CAQ08209 521 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 MAPK8IP2Q13387 824 aaPredicted RBP14.75□□□□□ -0.05
LDLR-213ENST00000560502 HSF5Q4G112 596 aaPredicted RBP14.75□□□□□ -0.05
LDLR-213ENST00000560502 RHBDF2Q6PJF5 856 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 WDR59Q6PJI9 974 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 CYP2U1Q7Z449 544 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 PHTF2Q8N3S3 785 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 ALLCQ8N6M5 410 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 IL17RCQ8NAC3 791 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 EHBP1Q8NDI1 1231 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 FBXL13Q8NEE6 735 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 ZFRQ96KR1 1074 aaKnown RBP14.75□□□□□ -0.05
LDLR-213ENST00000560502 PNKPQ96T60 521 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 B3GNT5Q9BYG0 378 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 XYLT2Q9H1B5 865 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 SNX25Q9H3E2 840 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 RRAGDQ9NQL2 400 aaPredicted RBP14.75□□□□□ -0.05
LDLR-213ENST00000560502 SMPD4Q9NXE4 827 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 CFAP97Q9P2B7 532 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 CACNA1EQ15878 2313 aa14.75□□□□□ -0.05
LDLR-213ENST00000560502 PCNX2A6NKB5 2137 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 SOWAHDA6NJG2 315 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 SGK1O00141 431 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 SCAMP3O14828 347 aaKnown RBP14.74□□□□□ -0.05
LDLR-213ENST00000560502 KAT7O95251 611 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 SERPING1P05155 500 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 PROS1P07225 676 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 DLATP10515 647 aaKnown RBP14.74□□□□□ -0.05
LDLR-213ENST00000560502 SLC9A1P19634 815 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 P2RY2P41231 377 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 JAM2P57087 298 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 DLG4P78352 724 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 KRT83P78385 493 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 DAB2IPQ5VWQ8 1189 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 TDRD10Q5VZ19 366 aaKnown RBP14.74□□□□□ -0.05
LDLR-213ENST00000560502 ZNF662Q6ZS27 426 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 ENOSF1Q7L5Y1 443 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 DDX42Q86XP3 938 aaKnown RBP eCLIP14.74□□□□□ -0.051e-7■■■□□ 15
LDLR-213ENST00000560502 B3GALNT2Q8NCR0 500 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 OR6B3Q8NGW1 331 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 LMO3Q8TAP4 145 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 PLEKHO2Q8TD55 490 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 ZNF516Q92618 1163 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 SLITRK1Q96PX8 696 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 STK33Q9BYT3 514 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 TMEM9BQ9NQ34 198 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 EVLQ9UI08 416 aaPredicted RBP14.74□□□□□ -0.05
LDLR-213ENST00000560502 PPP2R2CQ9Y2T4 447 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 ADGRG1Q9Y653 693 aa14.74□□□□□ -0.05
LDLR-213ENST00000560502 ATP8B3O60423 1300 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 MYH10P35580 1976 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 E2F8A0AVK6 867 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 EIF3CLB5ME19 914 aaKnown RBP14.73□□□□□ -0.05
LDLR-213ENST00000560502 CLDN5O00501 218 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 ADAM23O75077 832 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 ALDH1A2O94788 518 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 GFPT2O94808 682 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 NDUFA10O95299 355 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 KLF8O95600 359 aaPredicted RBP14.73□□□□□ -0.05
LDLR-213ENST00000560502 ADH1CP00326 375 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 APODP05090 189 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 MBL2P11226 248 aaPredicted RBP14.73□□□□□ -0.05
LDLR-213ENST00000560502 ADH5P11766 374 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 FERP16591 822 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 TNNI1P19237 187 aa14.73□□□□□ -0.05
LDLR-213ENST00000560502 CSRP1P21291 193 aaKnown RBP14.73□□□□□ -0.05
LDLR-213ENST00000560502 YWHAQP27348 245 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms