RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 NOP2P46087 812 aaKnown RBP12.37□□□□□ -0.43
LDLR-212ENST00000560467 SMARCB1Q12824 385 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 VEPH1Q14D04 833 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 NFE2Q16621 373 aaPredicted RBP12.37□□□□□ -0.43
LDLR-212ENST00000560467 MGAT5BQ3V5L5 792 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 DNTTIP2Q5QJE6 756 aaKnown RBP12.37□□□□□ -0.43
LDLR-212ENST00000560467 N4BP2L1Q5TBK1 243 aaPredicted RBP12.37□□□□□ -0.43
LDLR-212ENST00000560467 ARHGAP17Q68EM7 881 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 NAIF1Q69YI7 327 aaPredicted RBP12.37□□□□□ -0.43
LDLR-212ENST00000560467 SCARA3Q6AZY7 606 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 TRIM68Q6AZZ1 485 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 LCLAT1Q6UWP7 414 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 LIMS2Q7Z4I7 341 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 SYNPOQ8N3V7 929 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 RNF10Q8N5U6 811 aaKnown RBP12.37□□□□□ -0.43
LDLR-212ENST00000560467 C12orf50Q8NA57 414 aaPredicted RBP12.37□□□□□ -0.43
LDLR-212ENST00000560467 STKLD1Q8NE28 680 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 ACRBPQ8NEB7 543 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 SLC30A5Q8TAD4 765 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 RIN3Q8TB24 985 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 WHAMMQ8TF30 809 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 KBTBD7Q8WVZ9 684 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 ALS2CR12Q96Q35 445 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 GCNAQ96QF7 691 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 SYT15Q9BQS2 421 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 ZCWPW1Q9H0M4 648 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 MRPL47Q9HD33 250 aaKnown RBP12.37□□□□□ -0.43
LDLR-212ENST00000560467 LZTFL1Q9NQ48 299 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 HPS4Q9NQG7 708 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 GKN1Q9NS71 199 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 KCND1Q9NSA2 647 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 ADAM22Q9P0K1 906 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 LCMT1Q9UIC8 334 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 CCL26Q9Y258 94 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 CITO14578 2027 aa12.37□□□□□ -0.43
LDLR-212ENST00000560467 FOXD2O60548 495 aaPredicted RBP12.36□□□□□ -0.43
LDLR-212ENST00000560467 EGFP01133 1207 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 TMEM253P0C7T8 217 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 ARSAP15289 507 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 LMO2P25791 158 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 WEE1P30291 646 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 LIMK1P53667 647 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 FMO1Q01740 532 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 ORC1Q13415 861 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 GOLGA7BQ2TAP0 167 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 TMEM196Q5HYL7 178 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 NAA35Q5VZE5 725 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 TCEAL6Q6IPX3 200 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 ZNF662Q6ZS27 426 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 TMEM150AQ86TG1 271 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 LRRTM3Q86VH5 581 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 SPATA2LQ8IUW3 424 aaPredicted RBP12.36□□□□□ -0.43
LDLR-212ENST00000560467 PASD1Q8IV76 773 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 RHOT2Q8IXI1 618 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 CMTM8Q8IZV2 173 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 ANKRD52Q8NB46 1076 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 MYCBPAPQ8TBZ2 947 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 DDX1Q92499 740 aaKnown RBP12.36□□□□□ -0.43
LDLR-212ENST00000560467 TCEAL3Q969E4 200 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 HHIPQ96QV1 700 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 FAM83CQ9BQN1 747 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 EBF3Q9H4W6 596 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 ACP6Q9NPH0 428 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 THG1LQ9NWX6 298 aaKnown RBP12.36□□□□□ -0.43
LDLR-212ENST00000560467 WDR35Q9P2L0 1181 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 MYO1AQ9UBC5 1043 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 HSFX1Q9UBD0 423 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 ANGPTL2Q9UKU9 493 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 GUCA1BQ9UMX6 200 aa12.36□□□□□ -0.43
LDLR-212ENST00000560467 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.36□□□□□ -0.43
LDLR-212ENST00000560467 O00370 1275 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 TM4SF5O14894 197 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 RNF40O75150 1001 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 ZNF806P0C7X5 589 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 FAM200BP0CF97 657 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 CHRNB2P17787 502 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 ABCB4P21439 1286 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 ACAT1P24752 427 aaKnown RBP12.35□□□□□ -0.43
LDLR-212ENST00000560467 ADORA2BP29275 332 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 ACADSBP45954 432 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 TUFMP49411 452 aaKnown RBP12.35□□□□□ -0.43
LDLR-212ENST00000560467 GPR15P49685 360 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 BCAT1P54687 386 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 C1QBPQ07021 282 aaKnown RBP12.35□□□□□ -0.43
LDLR-212ENST00000560467 GRSF1Q12849 480 aaKnown RBP eCLIP12.35□□□□□ -0.43
LDLR-212ENST00000560467 TAF12Q16514 161 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 MDH1BQ5I0G3 518 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 STPG1Q5TH74 334 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 SLC2A14Q8TDB8 520 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 STK32AQ8WU08 396 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 CPA5Q8WXQ8 436 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 USP13Q92995 863 aaPredicted RBP12.35□□□□□ -0.43
LDLR-212ENST00000560467 LOXL4Q96JB6 756 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 PPP1R13BQ96KQ4 1090 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 TWNKQ96RR1 684 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 HNRNPABQ99729 332 aaKnown RBP12.35□□□□□ -0.43
LDLR-212ENST00000560467 ISCUQ9H1K1 167 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 FBRSL1Q9HCM7 1045 aaKnown RBP12.35□□□□□ -0.43
LDLR-212ENST00000560467 ST7Q9NRC1 585 aa12.35□□□□□ -0.43
LDLR-212ENST00000560467 FAM49BQ9NUQ9 324 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms