RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 CDK17Q00537 523 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 TSPY1Q01534 308 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 ROR1Q01973 937 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 DSG1Q02413 1049 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 ADCY1Q08828 1119 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 PTP4A2Q12974 167 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 PDCLQ13371 301 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 GPM6BQ13491 265 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 DDR2Q16832 855 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 USP41Q3LFD5 358 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 RAB6CQ53S08 254 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 DAB2IPQ5VWQ8 1189 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 ARHGAP17Q68EM7 881 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 ZNF280DQ6N043 979 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 KIAA1841Q6NSI8 718 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 FAM171BQ6P995 826 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 LCLAT1Q6UWP7 414 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 CLEC20AQ6ZU45 233 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 FAM183BPQ6ZVS7 135 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 MON1BQ7L1V2 547 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.5□□□□□ -1.53
SPG11-220ENST00000559933 TMC7Q7Z402 723 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 DDX53Q86TM3 631 aaKnown RBP5.5□□□□□ -1.53
SPG11-220ENST00000559933 RBM23Q86U06 439 aaKnown RBP5.5□□□□□ -1.53
SPG11-220ENST00000559933 UNC93AQ86WB7 457 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 SCN4BQ8IWT1 228 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 CRYBG2Q8N1P7 616 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 THEM5Q8N1Q8 247 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 AGGF1Q8N302 714 aaeCLIP5.5□□□□□ -1.53
SPG11-220ENST00000559933 GALNT11Q8NCW6 608 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 CCDC112Q8NEF3 446 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 GIPC2Q8TF65 315 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 TIFAQ96CG3 184 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 ZNF653Q96CK0 615 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 TRIM44Q96DX7 344 aaPredicted RBP5.5□□□□□ -1.53
SPG11-220ENST00000559933 PPP1R13BQ96KQ4 1090 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 FAM81BQ96LP2 452 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 FAM161BQ96MY7 647 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 TGS1Q96RS0 853 aaKnown RBP5.5□□□□□ -1.53
SPG11-220ENST00000559933 EIF3CQ99613 913 aaKnown RBP5.5□□□□□ -1.53
SPG11-220ENST00000559933 ACBD6Q9BR61 282 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 RAB6CQ9H0N0 254 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 PDCL3Q9H2J4 239 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 GOLPH3Q9H4A6 298 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 OSGEPQ9NPF4 335 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 ST7Q9NRC1 585 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 CHST7Q9NS84 486 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 DSEQ9UL01 958 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 ZKSCAN5Q9Y2L8 839 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 PPP2R2CQ9Y2T4 447 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 DAAM1Q9Y4D1 1078 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 PAXBP1Q9Y5B6 917 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 PCDHA13Q9Y5I0 950 aa5.5□□□□□ -1.53
SPG11-220ENST00000559933 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.49□□□□□ -1.53
SPG11-220ENST00000559933 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.49□□□□□ -1.53
SPG11-220ENST00000559933 MACROD2A1Z1Q3 448 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 C2orf71A6NGG8 1288 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 OR6C75A6NL08 312 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 TMEM110-MUSTN1A8MSY1 372 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 HHLA1C9JL84 531 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 C5orf67F2Z3F1 127 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 FANCGO15287 622 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 BUB1O43683 1085 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 LPXNO60711 386 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 TNFRSF21O75509 655 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 MOCS3O95396 460 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 LCA5LO95447 670 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 CXCL14O95715 111 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 FTLP02792 175 aaPredicted RBP5.49□□□□□ -1.53
SPG11-220ENST00000559933 CTSAP10619 480 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 EPCAMP16422 314 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 NPR3P17342 541 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 ATF6P18850 670 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 BMP8BP34820 402 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 GPD2P43304 727 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 NSFP46459 744 aaKnown RBP5.49□□□□□ -1.53
SPG11-220ENST00000559933 SLC5A3P53794 718 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 BCAT1P54687 386 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 GALCP54803 685 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 ERVK-21P61565 698 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 PLCB3Q01970 1234 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 ADIGQ0VDE8 80 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 BST2Q10589 180 aaKnown RBP5.49□□□□□ -1.53
SPG11-220ENST00000559933 ELAVL2Q12926 359 aaKnown RBP5.49□□□□□ -1.53
SPG11-220ENST00000559933 DUSP4Q13115 394 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 ZNF211Q13398 564 aaPredicted RBP5.49□□□□□ -1.53
SPG11-220ENST00000559933 BMS1Q14692 1282 aaKnown RBP5.49□□□□□ -1.53
SPG11-220ENST00000559933 TAF5Q15542 800 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 CNGA2Q16280 664 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 MGAT5BQ3V5L5 792 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 ARTNQ5T4W7 220 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 SLC8B1Q6J4K2 584 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 ACAD10Q6JQN1 1059 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 TRNP1Q6NT89 227 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 ALKBH5Q6P6C2 394 aaKnown RBP5.49□□□□□ -1.53
SPG11-220ENST00000559933 ANKS3Q6ZW76 656 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 KIAA1328Q86T90 577 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 SPATA2LQ8IUW3 424 aaPredicted RBP5.49□□□□□ -1.53
SPG11-220ENST00000559933 REXO1L1PQ8IX06 675 aa5.49□□□□□ -1.53
SPG11-220ENST00000559933 CCDC170Q8IYT3 715 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms