RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.65□□□□□ -0.86
HDDC3-204ENST00000559834 OSER1Q9NX31 292 aa9.65□□□□□ -0.86
HDDC3-204ENST00000559834 CLIC5Q9NZA1 410 aa9.65□□□□□ -0.86
HDDC3-204ENST00000559834 FBXO10Q9UK96 956 aa9.65□□□□□ -0.86
HDDC3-204ENST00000559834 RCOR1Q9UKL0 485 aa9.65□□□□□ -0.86
HDDC3-204ENST00000559834 TRAF3IP3Q9Y228 551 aa9.65□□□□□ -0.86
HDDC3-204ENST00000559834 SLC27A6Q9Y2P4 619 aa9.65□□□□□ -0.86
HDDC3-204ENST00000559834 NFE2L3Q9Y4A8 694 aa9.65□□□□□ -0.86
HDDC3-204ENST00000559834 STON1Q9Y6Q2 735 aa9.65□□□□□ -0.86
HDDC3-204ENST00000559834 FAM221BA6H8Z2 402 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 SRRM3A6NNA2 597 aaPredicted RBP9.64□□□□□ -0.87
HDDC3-204ENST00000559834 HHLA1C9JL84 531 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 TIMM44O43615 452 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 STC2O76061 302 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 CYBBP04839 570 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 CD59P13987 128 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 CMA1P23946 247 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 OXTRP30559 389 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 SLC8A3P57103 927 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 ENPEPQ07075 957 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 TRIP6Q15654 476 aaKnown RBP9.64□□□□□ -0.87
HDDC3-204ENST00000559834 SPOPLQ6IQ16 392 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 Q6ZNB5 142 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 GPRIN1Q7Z2K8 1008 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 CCDC186Q7Z3E2 898 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 CADM4Q8NFZ8 388 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 BHMTQ93088 406 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 SNX21Q969T3 373 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 FAXDC2Q96IV6 333 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 HEXIM2Q96MH2 286 aaKnown RBP9.64□□□□□ -0.87
HDDC3-204ENST00000559834 UBXN6Q9BZV1 441 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 PRDM16Q9HAZ2 1276 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 NMUR1Q9HB89 426 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 CD248Q9HCU0 757 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 FSCN3Q9NQT6 498 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 ITM2CQ9NQX7 267 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 CACNA2D2Q9NY47 1150 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 PLK2Q9NYY3 685 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 HMGXB4Q9UGU5 601 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 NUDT5Q9UKK9 219 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 STRIP2Q9ULQ0 834 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 RAD54BQ9Y620 910 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 USP3Q9Y6I4 520 aa9.64□□□□□ -0.87
HDDC3-204ENST00000559834 A0A1B0GTW7 788 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 MEI4A8MW99 385 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 WASH3PC4AMC7 463 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 MDM4O15151 490 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 ACTN4O43707 911 aaKnown RBP9.63□□□□□ -0.87
HDDC3-204ENST00000559834 CILPO75339 1184 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 PENKP01210 267 aaPredicted RBP9.63□□□□□ -0.87
HDDC3-204ENST00000559834 ACADMP11310 421 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 CD58P19256 250 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 MAOBP27338 520 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 GTF2H1P32780 548 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 PSMC2P35998 433 aaKnown RBP9.63□□□□□ -0.87
HDDC3-204ENST00000559834 GCLMP48507 274 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 ARID5AQ03989 594 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 NFIL3Q16649 462 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 RSRC2Q7L4I2 434 aaKnown RBP9.63□□□□□ -0.87
HDDC3-204ENST00000559834 SCD5Q86SK9 330 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 TMPRSS6Q8IU80 811 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 CHCHD4Q8N4Q1 142 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 DNASE2BQ8WZ79 361 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 PRCCQ92733 491 aaPredicted RBP9.63□□□□□ -0.87
HDDC3-204ENST00000559834 ERLEC1Q96DZ1 483 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 SIPA1Q96FS4 1042 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 TOE1Q96GM8 510 aaKnown RBP9.63□□□□□ -0.87
HDDC3-204ENST00000559834 TWNKQ96RR1 684 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 NUP58Q9BVL2 599 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 SLC2A11Q9BYW1 496 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 NIF3L1Q9GZT8 377 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 WSB2Q9NYS7 404 aaPredicted RBP9.63□□□□□ -0.87
HDDC3-204ENST00000559834 THAP10Q9P2Z0 257 aaPredicted RBP9.63□□□□□ -0.87
HDDC3-204ENST00000559834 RASAL2Q9UJF2 1139 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 KLK13Q9UKR3 277 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 USP24Q9UPU5 2620 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 CACNA1GO43497 2377 aa9.63□□□□□ -0.87
HDDC3-204ENST00000559834 PLXND1Q9Y4D7 1925 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 METTL12A8MUP2 240 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 SH3BP5O60239 455 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 STX10O60499 249 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 KLKB1P03952 638 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 NCAM1P13591 858 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 NR2F2P24468 414 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 CORO1AP31146 461 aaKnown RBP9.62□□□□□ -0.87
HDDC3-204ENST00000559834 MFAP3P55082 362 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 DNM1Q05193 864 aaKnown RBP9.62□□□□□ -0.87
HDDC3-204ENST00000559834 PPP3CAQ08209 521 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 EFEMP1Q12805 493 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 ADAM9Q13443 819 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 ENPP2Q13822 863 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 EIF4HQ15056 248 aaKnown RBP9.62□□□□□ -0.87
HDDC3-204ENST00000559834 FUT11Q495W5 492 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 C1orf220Q5T0J3 134 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 PPP1R26Q5T8A7 1209 aaPredicted RBP9.62□□□□□ -0.87
HDDC3-204ENST00000559834 FYB2Q5VWT5 728 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 KRT39Q6A163 491 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 IL27RAQ6UWB1 636 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 LRSAM1Q6UWE0 723 aa9.62□□□□□ -0.87
HDDC3-204ENST00000559834 RAB44Q7Z6P3 723 aaPredicted RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms