RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 IGLV3-25P01717 112 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 PTMAP06454 111 aaKnown RBP13.38□□□□□ -0.27
SHMT2-227ENST00000557269 HMBSP08397 361 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 TMEM253P0C7T8 217 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 ATXN1P54253 815 aaKnown RBP13.38□□□□□ -0.27
SHMT2-227ENST00000557269 ZP2Q05996 745 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 ZNF252P-AS1Q0IIN9 211 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 CCDC173Q0VFZ6 552 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 EIF4EBP2Q13542 120 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-227ENST00000557269 HTR4Q13639 388 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 SPA17Q15506 151 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 C15orf59Q2T9L4 293 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-227ENST00000557269 ARCQ7LC44 396 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 ADHFE1Q8IWW8 467 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 ZDHHC14Q8IZN3 488 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 TTC16Q8NEE8 873 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 CCDC112Q8NEF3 446 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 SH3RF2Q8TEC5 729 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 ACSF2Q96CM8 615 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-227ENST00000557269 TRIM11Q96F44 468 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 BTBD6Q96KE9 485 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 CDK5RAP1Q96SZ6 601 aaKnown RBP13.38□□□□□ -0.27
SHMT2-227ENST00000557269 TBCBQ99426 244 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 NUP85Q9BW27 656 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 OLA1Q9NTK5 396 aaKnown RBP13.38□□□□□ -0.27
SHMT2-227ENST00000557269 ZMYM5Q9UJ78 669 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 FAM50BQ9Y247 325 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 ZFP37Q9Y6Q3 630 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-227ENST00000557269 NUMBLQ9Y6R0 609 aa13.38□□□□□ -0.27
SHMT2-227ENST00000557269 SYNJ2BP-COX16A0A087WUM0 186 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 HEPACAM2A8MVW5 462 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 M0QYT0 321 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 STC2O76061 302 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 TRUB2O95900 331 aaKnown RBP13.37□□□□□ -0.27
SHMT2-227ENST00000557269 KLKB1P03952 638 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 IRF1P10914 325 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 PDGFRAP16234 1089 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 GPD1P21695 349 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 SULT1E1P49888 294 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 ATP11AP98196 1134 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 ZNF77Q15935 545 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 C10orf76Q5T2E6 689 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 DCUN1D2Q6PH85 259 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 VITQ6UXI7 678 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 BNIPLQ7Z465 357 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 TADA2BQ86TJ2 420 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 CELF5Q8N6W0 485 aaKnown RBP13.37□□□□□ -0.27
SHMT2-227ENST00000557269 CTNNBL1Q8WYA6 563 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-227ENST00000557269 TRIM62Q9BVG3 475 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 LACRTQ9GZZ8 138 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 ZFP14Q9HCL3 533 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 OSGEPQ9NPF4 335 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 COX16Q9P0S2 106 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 CFAP97Q9P2B7 532 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 INTUQ9ULD6 942 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 NR2E1Q9Y466 385 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 ADGRG1Q9Y653 693 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 DUSP10Q9Y6W6 482 aa13.37□□□□□ -0.27
SHMT2-227ENST00000557269 NUP210Q8TEM1 1887 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-227ENST00000557269 C19orf67A6NJJ6 358 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 DPYSL4O14531 572 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 ARHGAP6O43182 974 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 IRAK2O43187 625 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 CCP110O43303 1012 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 IGLV3-27P01718 113 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 ASGR2P07307 311 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 ZNF143P52747 638 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-227ENST00000557269 USP4Q13107 963 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 NME3Q13232 169 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 GRM2Q14416 872 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 TRIP4Q15650 581 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-227ENST00000557269 SLC25A52Q3SY17 297 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 CPNE8Q86YQ8 564 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.36□□□□□ -0.27
SHMT2-227ENST00000557269 ARFGAP1Q8N6T3 406 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 SLC35G2Q8TBE7 412 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 CENPIQ92674 756 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-227ENST00000557269 ELSPBP1Q96BH3 223 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 SLC39A13Q96H72 371 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 FCRL2Q96LA5 508 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-227ENST00000557269 NECAB3Q96P71 396 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-227ENST00000557269 FAM204AQ9H8W3 233 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 KCNK12Q9HB15 430 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 CD320Q9NPF0 282 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 ANLNQ9NQW6 1124 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 PIGVQ9NUD9 493 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 DDIT4Q9NX09 232 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 CTTNBP2NLQ9P2B4 639 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 TRIM10Q9UDY6 481 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 SALL4Q9UJQ4 1053 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 SCINQ9Y6U3 715 aa13.36□□□□□ -0.27
SHMT2-227ENST00000557269 HELZP42694 1942 aaKnown RBP13.35□□□□□ -0.27
SHMT2-227ENST00000557269 TCF20Q9UGU0 1960 aaKnown RBP13.35□□□□□ -0.27
SHMT2-227ENST00000557269 I6L893 689 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-227ENST00000557269 ECI2O75521 394 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 ENDOD1O94919 500 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 SDC4P31431 198 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 PTPN9P43378 593 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 VAV2P52735 878 aa13.35□□□□□ -0.27
SHMT2-227ENST00000557269 HDAC4P56524 1084 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms