RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 ACP6Q9NPH0 428 aa16.03■□□□□ 0.16
SHMT2-204ENST00000553324 ARHGEF4Q9NR80 690 aa16.03■□□□□ 0.16
SHMT2-204ENST00000553324 AGO1Q9UL18 857 aaKnown RBP16.03■□□□□ 0.16
SHMT2-204ENST00000553324 R4GN57 208 aa16.03■□□□□ 0.16
SHMT2-204ENST00000553324 KIF26AQ9ULI4 1882 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-204ENST00000553324 CACNA1IQ9P0X4 2223 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 CCDC163A0A0D9SF12 145 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 TBC1D3BA6NDS4 549 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 K7EQS6 105 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 PIK3R2O00459 728 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 GFRA3O60609 400 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 LATS1O95835 1130 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 KLKB1P03952 638 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 CYBBP04839 570 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 HMBSP08397 361 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 TDGF1P13385 188 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 NCAM1P13591 858 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 TYRP14679 529 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 ZNF18P17022 549 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 COPB1P53618 953 aaKnown RBP16.02■□□□□ 0.16
SHMT2-204ENST00000553324 PDCLQ13371 301 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 ANO6Q4KMQ2 910 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 NAIF1Q69YI7 327 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-204ENST00000553324 MSANTD2Q6P1R3 559 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 TPGS1Q6ZTW0 290 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 SLC47A2Q86VL8 602 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 LONP2Q86WA8 852 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 DENND1CQ8IV53 801 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 CPXM2Q8N436 756 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 NAT16Q8N8M0 369 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 RPLP0P6Q8NHW5 317 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 FAM149B1Q96BN6 582 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 PPP1R13BQ96KQ4 1090 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 SFMBT1Q9UHJ3 866 aa16.02■□□□□ 0.16
SHMT2-204ENST00000553324 PATJQ8NI35 1801 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 E5RJQ4 531 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 NEDD8-MDP1E9PL57 170 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 K7ESF4 209 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 CAPN9O14815 690 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 CACNG3O60359 315 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 LILRB5O75023 590 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 TULP3O75386 442 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 GLI1P08151 1106 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 CYP11B1P15538 503 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 YWHAZP63104 245 aaKnown RBP16.01■□□□□ 0.15
SHMT2-204ENST00000553324 UBXN1Q04323 297 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 RING1Q06587 406 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 NNTQ13423 1086 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 NCAPHQ15003 741 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 E2F5Q15329 346 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 NUGGCQ68CJ6 796 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 WDTC1Q8N5D0 677 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 TMEM35BQ8NCS4 154 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 USP33Q8TEY7 942 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 IRX2Q9BZI1 471 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-204ENST00000553324 POPDC2Q9HBU9 364 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 FHOD1Q9Y613 1164 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 VPS13AQ96RL7 3174 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 USP34Q70CQ2 3546 aa16.01■□□□□ 0.15
SHMT2-204ENST00000553324 PIEZO1Q92508 2521 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 PRR23AA6NEV1 266 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 LGALS16A8MUM7 142 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 PAPSS1O43252 624 aaPredicted RBP16■□□□□ 0.15
SHMT2-204ENST00000553324 SLC11A2P49281 568 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 ZNF165P49910 485 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 SKOR2Q2VWA4 1001 aaPredicted RBP16■□□□□ 0.15
SHMT2-204ENST00000553324 C2orf27AQ580R0 203 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 EFHC1Q5JVL4 640 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 GRAMD4Q6IC98 578 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 TRMT11Q7Z4G4 463 aaKnown RBP16■□□□□ 0.15
SHMT2-204ENST00000553324 C12orf40Q86WS4 652 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 ZNF677Q86XU0 584 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 ZDHHC17Q8IUH5 632 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 AOPEPQ8N6M6 819 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 CLEC4CQ8WTT0 213 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 EZH1Q92800 747 aaPredicted RBP16■□□□□ 0.15
SHMT2-204ENST00000553324 AZIN2Q96A70 460 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 PCMTD1Q96MG8 357 aaPredicted RBP16■□□□□ 0.15
SHMT2-204ENST00000553324 SERPINB11Q96P15 392 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 DDX50Q9BQ39 737 aaKnown RBP16■□□□□ 0.15
SHMT2-204ENST00000553324 SYNCQ9H7C4 482 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 DNAJC17Q9NVM6 304 aaKnown RBP16■□□□□ 0.15
SHMT2-204ENST00000553324 ASNSD1Q9NWL6 643 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 CYTH4Q9UIA0 394 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 STOML2Q9UJZ1 356 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 AJAP1Q9UKB5 411 aaPredicted RBP16■□□□□ 0.15
SHMT2-204ENST00000553324 STARD13Q9Y3M8 1113 aa16■□□□□ 0.15
SHMT2-204ENST00000553324 HELZP42694 1942 aaKnown RBP16■□□□□ 0.15
SHMT2-204ENST00000553324 F8VZ95 297 aa15.99■□□□□ 0.15
SHMT2-204ENST00000553324 CAVIN2O95810 425 aa15.99■□□□□ 0.15
SHMT2-204ENST00000553324 PENKP01210 267 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-204ENST00000553324 DGKGP49619 791 aa15.99■□□□□ 0.15
SHMT2-204ENST00000553324 TBX4P57082 545 aa15.99■□□□□ 0.15
SHMT2-204ENST00000553324 POLR2FP61218 127 aaKnown RBP15.99■□□□□ 0.15
SHMT2-204ENST00000553324 FILIP1LQ4L180 1135 aa15.99■□□□□ 0.15
SHMT2-204ENST00000553324 MPPE1Q53F39 396 aa15.99■□□□□ 0.15
SHMT2-204ENST00000553324 EOGTQ5NDL2 527 aa15.99■□□□□ 0.15
SHMT2-204ENST00000553324 ADGRF1Q5T601 910 aa15.99■□□□□ 0.15
SHMT2-204ENST00000553324 ASCL5Q7RTU5 278 aa15.99■□□□□ 0.15
SHMT2-204ENST00000553324 WDR5BQ86VZ2 330 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms