RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 TTC4O95801 387 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 APRTP07741 180 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 ZSCAN5DPP0CG00 497 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 PEX5P50542 639 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 SLC12A2P55011 1212 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 RPS6P62753 249 aaKnown RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 AUHQ13825 339 aaKnown RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 PDIA5Q14554 519 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 ACAP1Q15027 740 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 PKN2Q16513 984 aaKnown RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 SHROOM1Q2M3G4 852 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 FAM182AQ5T1J6 154 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 MROH9Q5TGP6 573 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 C1orf228Q6PIY5 440 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 C6orf89Q6UWU4 347 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 MIGA2Q7L4E1 593 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 CYFIP1Q7L576 1253 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 FITM2Q8N6M3 262 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 CCNYL1Q8N7R7 359 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 ZNF513Q8N8E2 541 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 FAM149B1Q96BN6 582 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 SERPINB12Q96P63 405 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 ZSWIM1Q9BR11 485 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 ROPN1BQ9BZX4 212 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 RANBP17Q9H2T7 1088 aaKnown RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 C12orf65Q9H3J6 166 aaKnown RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 CAAP1Q9H8G2 361 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 ROPN1Q9HAT0 212 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 ATXN7L1Q9ULK2 861 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 AGAP1Q9UPQ3 857 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 AFG3L2Q9Y4W6 797 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 RNF103-CHMP3A0A140T963 221 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 PRAMEF27A3QJZ7 478 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 PEX1O43933 1283 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 TPST1O60507 370 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 RTN2O75298 545 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 ZBED1O96006 694 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 FOSP01100 380 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 TMEM191BP0C7N4 346 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 CASP5P51878 434 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 POLGP54098 1239 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 BPIFB4P59827 614 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 GSTM4Q03013 218 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 PPATQ06203 517 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 ABCB5Q2M3G0 1257 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 HABP4Q5JVS0 413 aaKnown RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 SPOPLQ6IQ16 392 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 RGMBQ6NW40 437 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 C12orf40Q86WS4 652 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 SIAH1Q8IUQ4 282 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 RHOT1Q8IXI2 618 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 ATP11CQ8NB49 1132 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 KAT5Q92993 513 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 OLFM3Q96PB7 478 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 IWS1Q96ST2 819 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 MTA3Q9BTC8 594 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 KIFC3Q9BVG8 833 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 CCDC86Q9H6F5 360 aaKnown RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 GBA2Q9HCG7 927 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 CHST7Q9NS84 486 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 PCMTD2Q9NV79 361 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 PAIP2BQ9ULR5 123 aaKnown RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 TANC1Q9C0D5 1861 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 SLC22A31A6NKX4 558 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 MEI4A8MW99 385 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 AXIN1O15169 862 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 GMNNO75496 209 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 PDE5AO76074 875 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 PECAM1P16284 738 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 ADRA1DP25100 572 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 SSTR1P30872 391 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 HNRNPH3P31942 346 aaKnown RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 HOXD13P35453 343 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 YARSP54577 528 aaKnown RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 SH3BGRP55822 239 aaPredicted RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 LBRQ14739 615 aaKnown RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 SLC44A4Q53GD3 710 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 KCNT1Q5JUK3 1230 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 JADE1Q6IE81 842 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 LRRC6Q86X45 466 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 ARHGAP18Q8N392 663 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 OR6P1Q8NGX9 317 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 PYDC1Q8WXC3 89 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 ALG3Q92685 438 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 FAM84AQ96KN4 292 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 CCDC138Q96M89 665 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 TMEM39BQ9GZU3 492 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 ERVK-5Q9HDB9 667 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 CHCHD3Q9NX63 227 aaKnown RBP5.68□□□□□ -1.5
LIMA1-203ENST00000547825 SLC9A2Q9UBY0 812 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 BCAP29Q9UHQ4 241 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 CCPG1Q9ULG6 757 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 PCDHGC5Q9Y5F6 944 aa5.68□□□□□ -1.5
LIMA1-203ENST00000547825 DENND3A2RUS2 1198 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 C2orf71A6NGG8 1288 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 CHURC1-FNTBB4DL54 471 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 PPP1R11O60927 126 aaPredicted RBP5.67□□□□□ -1.5
LIMA1-203ENST00000547825 GH2P01242 217 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 FAM200BP0CF97 657 aa5.67□□□□□ -1.5
LIMA1-203ENST00000547825 IMPDH2P12268 514 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms