RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 SYPL2Q5VXT5 272 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 NUGGCQ68CJ6 796 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 TRNP1Q6NT89 227 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 CC2D1AQ6P1N0 951 aaPredicted RBP16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 GAREM2Q75VX8 874 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 PHLDB2Q86SQ0 1253 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 TMEM150AQ86TG1 271 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 CD101Q93033 1021 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 AZIN2Q96A70 460 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 PLD4Q96BZ4 506 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 HES6Q96HZ4 224 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 RIPOR3Q96MK2 946 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 CFAP57Q96MR6 1250 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 ADAM7Q9H2U9 754 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 TASP1Q9H6P5 420 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 ZNF334Q9HCZ1 680 aaPredicted RBP16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 DDIT4Q9NX09 232 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 MARCH2Q9P0N8 246 aa16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 DNMT3BQ9UBC3 853 aaKnown RBP16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 ZFP37Q9Y6Q3 630 aaPredicted RBP16.68■□□□□ 0.26
PRPF40A-212ENST00000545856 TRAV19A0A0A6YYK7 116 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 CTAGE9A4FU28 777 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 ZNF487B1APH4 448 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 GJB6O95452 261 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 HTR7P34969 479 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 HDAC4P56524 1084 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 TUBB2AQ13885 445 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 HABP4Q5JVS0 413 aaKnown RBP16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 C10orf120Q5SQS8 335 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 TAC4Q86UU9 113 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 UNC45BQ8IWX7 931 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 MICALL1Q8N3F8 863 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 NDRG1Q92597 394 aaKnown RBP16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 EDEM1Q92611 657 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 LRCH3Q96II8 777 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 NAPGQ99747 312 aaPredicted RBP16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 TUBB2BQ9BVA1 445 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 TRIM7Q9C029 511 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 DCLK3Q9C098 648 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 NACA2Q9H009 215 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 CARD9Q9H257 536 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 ATXN3LQ9H3M9 355 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 IGFLR1Q9H665 355 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 KIF9Q9HAQ2 790 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 PRDM16Q9HAZ2 1276 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 WDR6Q9NNW5 1121 aaKnown RBP16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 OSER1Q9NX31 292 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 GDE1Q9NZC3 331 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 SLC12A6Q9UHW9 1150 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 USP18Q9UMW8 372 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 PCDHA3Q9Y5H8 950 aa16.67■□□□□ 0.26
PRPF40A-212ENST00000545856 IGLV3-27P01718 113 aa16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 APOEP02649 317 aa16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 MYL4P12829 197 aa16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 ATP11AP98196 1134 aa16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 SLC25A11Q02978 314 aaKnown RBP16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 RPS6KA1Q15418 735 aa16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 ATAT1Q5SQI0 421 aa16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 OTUD1Q5VV17 481 aaPredicted RBP16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 SYCE2Q6PIF2 218 aa16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 KATNAL2Q8IYT4 538 aa16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 SLC35F6Q8N357 371 aa16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 SHKBP1Q8TBC3 707 aa16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 SLC39A13Q96H72 371 aa16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 RCOR3Q9P2K3 495 aaPredicted RBP16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 ZNF510Q9Y2H8 683 aa16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 MRPS23Q9Y3D9 190 aaKnown RBP16.66■□□□□ 0.26
PRPF40A-212ENST00000545856 DOCK8Q8NF50 2099 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 TCP1P17987 556 aaKnown RBP16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 IGFBP4P22692 258 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 MIPP30301 263 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 CETN2P41208 172 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 COPS2P61201 443 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 NRG1Q02297 640 aaPredicted RBP16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 C15orf59Q2T9L4 293 aaPredicted RBP16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 TMC5Q6UXY8 1006 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 GRASPQ7Z6J2 395 aaPredicted RBP16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 MAP7D3Q8IWC1 876 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 C17orf53Q8N3J3 647 aaPredicted RBP16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 RBM41Q96IZ5 413 aaKnown RBP16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 BTBD6Q96KE9 485 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 MSLNLQ96KJ4 702 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 C16orf45Q96MC5 204 aaPredicted RBP16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 HAPLN3Q96S86 360 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 RETREG1Q9H6L5 497 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 WDCPQ9H6R7 721 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 CCSER2Q9H7U1 834 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 PIGVQ9NUD9 493 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 ARHGEF38Q9NXL2 777 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 CLEC1BQ9P126 229 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 ARHGAP26Q9UNA1 814 aa16.65■□□□□ 0.26
PRPF40A-212ENST00000545856 A0A1W2PRU2 124 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 COCHO43405 550 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 HDCP19113 662 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 GTF2F1P35269 517 aaKnown RBP eCLIP16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 AVPR1AP37288 418 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 RWDD2BP57060 319 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 TBX4P57082 545 aa16.64■□□□□ 0.26
PRPF40A-212ENST00000545856 EFEMP1Q12805 493 aa16.64■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms