RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 C18orf8Q96DM3 657 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 COX4I2Q96KJ9 171 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 FAM96AQ9H5X1 160 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 TMEM165Q9HC07 324 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 INIPQ9NRY2 104 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 RHBDL2Q9NX52 303 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 DNM3Q9UQ16 869 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 EFR3BQ9Y2G0 817 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 NR2E1Q9Y466 385 aa5.46□□□□□ -1.54
USP28-213ENST00000544967 PMM2O15305 246 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 P4HA2O15460 535 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 ESRRBO95718 433 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 CLPTM1O96005 669 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 GH1P01241 217 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 CD4P01730 458 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 TFAP2AP05549 437 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 PGK2P07205 417 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 SPATA31D3P0C874 917 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 KRT13P13646 458 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 TAL1P17542 331 aaPredicted RBP5.45□□□□□ -1.54
USP28-213ENST00000544967 CCND3P30281 292 aaPredicted RBP5.45□□□□□ -1.54
USP28-213ENST00000544967 CETN2P41208 172 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 SNAP25P60880 206 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 RELAQ04206 551 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 NSUN2Q08J23 767 aaKnown RBP eCLIP5.45□□□□□ -1.54
USP28-213ENST00000544967 TRIM32Q13049 653 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 THOC5Q13769 683 aaKnown RBP5.45□□□□□ -1.54
USP28-213ENST00000544967 DEPDC1Q5TB30 811 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 TMEM53Q6P2H8 277 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 KLHL35Q6PF15 583 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 DRICH1Q6PGQ1 229 aaPredicted RBP5.45□□□□□ -1.54
USP28-213ENST00000544967 SPATA31D4Q6ZUB0 917 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 ANO5Q75V66 913 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 OR8H2Q8N162 312 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 ZNF276Q8N554 614 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 GDAP1Q8TB36 358 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 LNX1Q8TBB1 728 aaPredicted RBP5.45□□□□□ -1.54
USP28-213ENST00000544967 MGARPQ8TDB4 240 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 STON2Q8WXE9 905 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 GPKOWQ92917 476 aaPredicted RBP eCLIP5.45□□□□□ -1.54
USP28-213ENST00000544967 TOX2Q96NM4 488 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 RMDN3Q96TC7 470 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 DHRS4Q9BTZ2 278 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 CCDC68Q9H2F9 335 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 KIAA1586Q9HCI6 787 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 VPS45Q9NRW7 570 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 KANSL3Q9P2N6 904 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 MAFBQ9Y5Q3 323 aaPredicted RBP5.45□□□□□ -1.54
USP28-213ENST00000544967 TRIM64BA6NI03 449 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 FAM86B1E9PN63 330 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 GPR37L1O60883 481 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 ARIH2O95376 493 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 FAM86B2P0C5J1 330 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 CCDC159P0C7I6 412 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 POLR2EP19388 210 aaKnown RBP5.45□□□□□ -1.54
USP28-213ENST00000544967 PRDX6P30041 224 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 SLCO1A2P46721 670 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 ALDH3B2P48448 385 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 COPAP53621 1224 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 NAPAP54920 295 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 ADCY1Q08828 1119 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 KRT81Q14533 505 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 P3H1Q32P28 736 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 IRAK1BP1Q5VVH5 260 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 NIPAL1Q6NVV3 410 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 LVRNQ6Q4G3 990 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 METTL7BQ6UX53 244 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 LINC00299Q6ZSB3 139 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 METTL3Q86U44 580 aaKnown RBP5.45□□□□□ -1.54
USP28-213ENST00000544967 ZNF410Q86VK4 478 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 RAET1EQ8TD07 263 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 ALG3Q92685 438 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 EME1Q96AY2 570 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 FAM20AQ96MK3 541 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 C7orf26Q96N11 449 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 OLFM1Q99784 485 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 TDRD1Q9BXT4 1180 aaKnown RBP5.45□□□□□ -1.54
USP28-213ENST00000544967 TRIM31Q9BZY9 425 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 SENP6Q9GZR1 1112 aaPredicted RBP5.45□□□□□ -1.54
USP28-213ENST00000544967 UNC93B1Q9H1C4 597 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 TRABDQ9H4I3 376 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 HMX1Q9NP08 348 aaPredicted RBP5.45□□□□□ -1.54
USP28-213ENST00000544967 ARHGEF4Q9NR80 690 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 ARL8BQ9NVJ2 186 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 GTF3C4Q9UKN8 822 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 ALG6Q9Y672 507 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 PCNTO95613 3336 aa5.45□□□□□ -1.54
USP28-213ENST00000544967 COL4A4P53420 1690 aaPredicted RBP5.45□□□□□ -1.54
USP28-213ENST00000544967 C15orf38-AP3S2A0A0A6YYH1 394 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 TRIM43BA6NCK2 446 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 NBNO60934 754 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 ZCCHC18P0CG32 403 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 MYL4P12829 197 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 UBA1P22314 1058 aaKnown RBP5.44□□□□□ -1.54
USP28-213ENST00000544967 HALP42357 657 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 STT3AP46977 705 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 VPS41P49754 854 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 SLC26A2P50443 739 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 DNA2P51530 1060 aa5.44□□□□□ -1.54
USP28-213ENST00000544967 ARFIP2P53365 341 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms