RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 FKBP1BP68106 108 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 SETDB1Q15047 1291 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 KCNT2Q6UVM3 1135 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 OSTM1Q86WC4 334 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 VPS52Q8N1B4 723 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 KIF2BQ8N4N8 673 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 CCDC33Q8N5R6 958 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 ARRDC4Q8NCT1 418 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 APOPT1Q96IL0 206 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 DNAI2Q9GZS0 605 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 CXorf49A8MYA2 514 aaPredicted RBP18.67■□□□□ 0.58
VIM-209ENST00000544301 TRDMT1O14717 391 aaKnown RBP18.67■□□□□ 0.58
VIM-209ENST00000544301 XPO1O14980 1071 aaKnown RBP18.67■□□□□ 0.58
VIM-209ENST00000544301 FAM155BO75949 473 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 UNC5CO95185 931 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 PYGBP11216 843 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 PRKCHP24723 683 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 MATKP42679 507 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 MAP2K5Q13163 448 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 RIPK1Q13546 671 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 EFHC1Q5JVL4 640 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 TTC39BQ5VTQ0 682 aaPredicted RBP18.67■□□□□ 0.58
VIM-209ENST00000544301 NCBP2-AS2Q69YL0 99 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 ZNF534Q76KX8 674 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 PYROXD2Q8N2H3 581 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 PPM1NQ8N819 430 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 SMG8Q8ND04 991 aaKnown RBP18.67■□□□□ 0.58
VIM-209ENST00000544301 NDRG1Q92597 394 aaKnown RBP18.67■□□□□ 0.58
VIM-209ENST00000544301 LRRC39Q96DD0 335 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 ERP27Q96DN0 273 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 TNIP3Q96KP6 325 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 LRRC37BQ96QE4 947 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 DTLQ9NZJ0 730 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 CPA4Q9UI42 421 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 MFHAS1Q9Y4C4 1052 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 IPPQ9Y573 584 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 USP3Q9Y6I4 520 aa18.67■□□□□ 0.58
VIM-209ENST00000544301 DCTN3O75935 186 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 DHRS4L1P0CG22 281 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 GOT1P17174 413 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 TPSB2P20231 275 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 AMPD1P23109 780 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 WARSP23381 471 aaKnown RBP18.66■□□□□ 0.58
VIM-209ENST00000544301 ALDH3A1P30838 453 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 ETV4P43268 484 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 LILRA4P59901 499 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 IRF5Q13568 498 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 TPSAB1Q15661 275 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 LRRC6Q86X45 466 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 CTAGE3PQ8IX95 158 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 DEFB106AQ8N104 65 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 B3GALNT2Q8NCR0 500 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 MANSC1Q9H8J5 431 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 NOD2Q9HC29 1040 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 BAIAP2L1Q9UHR4 511 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 FZD10Q9ULW2 581 aa18.66■□□□□ 0.58
VIM-209ENST00000544301 TRIP12Q14669 1992 aaPredicted RBP18.65■□□□□ 0.58
VIM-209ENST00000544301 VGLL3A8MV65 326 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 MYL3P08590 195 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 KRT16P08779 473 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 GSTA2P09210 222 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 GTF2A1P52655 376 aaPredicted RBP18.65■□□□□ 0.58
VIM-209ENST00000544301 CRYBB1P53674 252 aaPredicted RBP18.65■□□□□ 0.58
VIM-209ENST00000544301 SLC25A52Q3SY17 297 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 PIGZQ86VD9 579 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 FAM131BQ86XD5 332 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 PTPRN2Q92932 1015 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 SIGLEC10Q96LC7 697 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 HNRNPABQ99729 332 aaKnown RBP18.65■□□□□ 0.58
VIM-209ENST00000544301 ALG13Q9NP73 1137 aaKnown RBP18.65■□□□□ 0.58
VIM-209ENST00000544301 ZNF180Q9UJW8 692 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 DGKIO75912 1065 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 APOEP02649 317 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 SULT1E1P49888 294 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 ADIGQ0VDE8 80 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 FYB2Q5VWT5 728 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 UNC5AQ6ZN44 842 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 TOP6BLQ8N6T0 577 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 DUSP16Q9BY84 665 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 NPHS2Q9NP85 383 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 SMYD2Q9NRG4 433 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 TXLNGQ9NUQ3 528 aa18.65■□□□□ 0.58
VIM-209ENST00000544301 TRIM49D1C9J1S8 452 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 CPT1AP50416 773 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 BEX3Q00994 111 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 HEATR6Q6AI08 1181 aaKnown RBP18.64■□□□□ 0.57
VIM-209ENST00000544301 CHSY1Q86X52 802 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 MPP5Q8N3R9 675 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 FAM149B1Q96BN6 582 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 OLFM3Q96PB7 478 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 FAM111AQ96PZ2 611 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 EBNA1BP2Q99848 306 aaKnown RBP18.64■□□□□ 0.57
VIM-209ENST00000544301 CLDN5O00501 218 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 DAB1O75553 588 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 CAPN15O75808 1086 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 SNRPAP09012 282 aaKnown RBP18.64■□□□□ 0.57
VIM-209ENST00000544301 VAV1P15498 845 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 ARL4AP40617 200 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 SEMA5AQ13591 1074 aa18.64■□□□□ 0.57
VIM-209ENST00000544301 PLEKHG4Q58EX7 1191 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms