RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 RRM2BQ7LG56 351 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 TAGAPQ8N103 731 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.05□□□□□ -1.12
VPS13D-211ENST00000543710 SPATA18Q8TC71 538 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 HLA-CQ95604 372 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 APOL4Q9BPW4 351 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 CACNA2D2Q9NY47 1150 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 AXIN2Q9Y2T1 843 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 MEGF6O75095 1541 aa8.05□□□□□ -1.12
VPS13D-211ENST00000543710 CAPN8A6NHC0 703 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 SDR42E2A6NKP2 422 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 DLL1O00548 723 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 STX7O15400 261 aaKnown RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 TEX33O43247 280 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 NDUFS3O75489 264 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 PDE9AO76083 593 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 CRTAMO95727 393 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 ALBP02768 609 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 TUFMP49411 452 aaKnown RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 PSEN2P49810 448 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 BAATQ14032 418 aaPredicted RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 CDO1Q16878 200 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 TRIM65Q6PJ69 517 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 KYAT3Q6YP21 454 aaKnown RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 LRRC49Q8IUZ0 686 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 SCUBE1Q8IWY4 988 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 PIGOQ8TEQ8 1089 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 SMG7Q92540 1137 aaKnown RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 PRMT6Q96LA8 375 aaPredicted RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 NELL2Q99435 816 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 FANCEQ9HB96 536 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 ASAH2Q9NR71 780 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 GPN3Q9UHW5 284 aaPredicted RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 PHTF1Q9UMS5 762 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 MAP2P11137 1827 aaKnown RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 CCDC195A0A1B0GUA6 201 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 C2orf81A6NN90 581 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 DFFAO00273 331 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 MAN2B1O00754 1011 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 PRPF4O43172 522 aaKnown RBP eCLIP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 CYP26A1O43174 497 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 CNOT3O75175 753 aaKnown RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 CFIP05156 583 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 ITGAXP20702 1163 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 CES1P23141 567 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 HOXA13P31271 388 aaPredicted RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 SERPINB5P36952 375 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 NUP62P37198 522 aaPredicted RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 ADCY1Q08828 1119 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 LBRQ14739 615 aaKnown RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 TMTC4Q5T4D3 741 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 PGM2Q96G03 612 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 CLCA2Q9UQC9 943 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 NID2Q14112 1375 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 TMEM120BA0PK00 339 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 ERI2A8K979 691 aaKnown RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 H3BMM5 538 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 SKIV2L2P42285 1042 aaKnown RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 TAF6P49848 677 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 USP10Q14694 798 aaKnown RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 MFSD10Q14728 455 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 NFE2Q16621 373 aaPredicted RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 WDR45BQ5MNZ6 344 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 SHQ1Q6PI26 577 aaKnown RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 C15orf52Q6ZUT6 534 aaKnown RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 TAS2R42Q7RTR8 314 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 ULK2Q8IYT8 1036 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 LRRC43Q8N309 656 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 CASKIN2Q8WXE0 1202 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 RNF25Q96BH1 459 aaPredicted RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 APOPT1Q96IL0 206 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 CCT7Q99832 543 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 CXorf56Q9H5V9 222 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 TASP1Q9H6P5 420 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 RBM12Q9NTZ6 932 aaKnown RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 POLG2Q9UHN1 485 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 SPDYE5A6NIY4 337 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 USP27XA6NNY8 438 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 CYP3A4P08684 503 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 ELNP15502 786 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 HTR7P34969 479 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 DUSP3P51452 185 aaPredicted RBP8.04□□□□□ -1.12
VPS13D-211ENST00000543710 IRAK1P51617 712 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 VGLL4Q14135 290 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 SPDYE7PQ495Y7 208 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 ARMCX4Q5H9R4 360 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 IRGCQ6NXR0 463 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 C4orf19Q8IY42 314 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 SUSD6Q92537 303 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 EME1Q96AY2 570 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 PLEKHA4Q9H4M7 779 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 TMEM216Q9P0N5 145 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 PKP3Q9Y446 797 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 MYO5BQ9ULV0 1848 aa8.04□□□□□ -1.12
VPS13D-211ENST00000543710 PNMA8CA0A1B0GUJ8 204 aa8.03□□□□□ -1.12
VPS13D-211ENST00000543710 ABHD14A-ACY1A0A1B0GW23 586 aa8.03□□□□□ -1.12
VPS13D-211ENST00000543710 SUPT3HB4E1H0 165 aa8.03□□□□□ -1.12
VPS13D-211ENST00000543710 AKAP10O43572 662 aa8.03□□□□□ -1.12
VPS13D-211ENST00000543710 CXCL14O95715 111 aa8.03□□□□□ -1.12
VPS13D-211ENST00000543710 SYPP08247 313 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms