RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 GMIPQ9P107 970 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 AP4E1Q9UPM8 1137 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 YIPF1Q9Y548 306 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 LAMA2P24043 3122 aaKnown RBP18.44■□□□□ 0.54
CLIP1-215ENST00000541108 GRXCR1A8MXD5 290 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 TGM5O43548 720 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 CA3P07451 260 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 KRT10P13645 584 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 MYOGP15173 224 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 L1CAMP32004 1257 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 ADRA1BP35368 520 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 PGFP49763 221 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 MTMR3Q13615 1198 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 DPYSL3Q14195 570 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 KRT81Q14533 505 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 ZC3H12AQ5D1E8 599 aaKnown RBP18.44■□□□□ 0.54
CLIP1-215ENST00000541108 FAM109BQ6ICB4 259 aaPredicted RBP18.44■□□□□ 0.54
CLIP1-215ENST00000541108 PDE12Q6L8Q7 609 aaKnown RBP18.44■□□□□ 0.54
CLIP1-215ENST00000541108 RTL10Q7L3V2 364 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 MAATS1Q7Z4T9 603 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 KLHL7Q8IXQ5 586 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 CCDC185Q8N715 623 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 STKLD1Q8NE28 680 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 SERPINB11Q96P15 392 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 CDK5RAP1Q96SZ6 601 aaKnown RBP18.44■□□□□ 0.54
CLIP1-215ENST00000541108 HERPUD2Q9BSE4 406 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 LRRC1Q9BTT6 524 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 CALN1Q9BXU9 219 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 DDX47Q9H0S4 455 aaKnown RBP18.44■□□□□ 0.54
CLIP1-215ENST00000541108 PCDH18Q9HCL0 1135 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.44■□□□□ 0.54
CLIP1-215ENST00000541108 OSER1Q9NX31 292 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 RCOR3Q9P2K3 495 aaPredicted RBP18.44■□□□□ 0.54
CLIP1-215ENST00000541108 INSL5Q9Y5Q6 135 aa18.44■□□□□ 0.54
CLIP1-215ENST00000541108 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.43■□□□□ 0.54
CLIP1-215ENST00000541108 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.43■□□□□ 0.54
CLIP1-215ENST00000541108 C2orf71A6NGG8 1288 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 IRAK2O43187 625 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 CD48P09326 243 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 HMGA1P17096 107 aaKnown RBP18.43■□□□□ 0.54
CLIP1-215ENST00000541108 IL4RP24394 825 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 CA8P35219 290 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 PPP3CCP48454 512 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 FNTAP49354 379 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 ERVK-21P61565 698 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 NNTQ13423 1086 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 TFDP2Q14188 446 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 LLGL1Q15334 1064 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 CCNG2Q16589 344 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 CCDC149Q6ZUS6 474 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 BBS12Q6ZW61 710 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 TAC4Q86UU9 113 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 TTC13Q8NBP0 860 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 ADAM32Q8TC27 787 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 RUBCNQ92622 972 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 MAGOHBQ96A72 148 aaKnown RBP18.43■□□□□ 0.54
CLIP1-215ENST00000541108 MAK16Q9BXY0 300 aaKnown RBP18.43■□□□□ 0.54
CLIP1-215ENST00000541108 ANKZF1Q9H8Y5 726 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 PRDM16Q9HAZ2 1276 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 PCYOX1Q9UHG3 505 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 ASB3Q9Y575 518 aa18.43■□□□□ 0.54
CLIP1-215ENST00000541108 SYNJ2BP-COX16A0A087WUM0 186 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 LPXNO60711 386 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 RHOXF2BP0C7M4 288 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 RARGP13631 454 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 KLRC2P26717 231 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 ZNF135P52742 658 aaPredicted RBP18.42■□□□□ 0.54
CLIP1-215ENST00000541108 EPHB3P54753 998 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 TAF12Q16514 161 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 CA9Q16790 459 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 EFHC2Q5JST6 749 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 BRMS1LQ5PSV4 323 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 KAZNQ674X7 775 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 ITIH5Q86UX2 942 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 FAF2Q96CS3 445 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 RNF157Q96PX1 679 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 RHOXF2Q9BQY4 288 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 FRMD8P1Q9BZ68 369 aaPredicted RBP18.42■□□□□ 0.54
CLIP1-215ENST00000541108 DHX35Q9H5Z1 703 aaKnown RBP18.42■□□□□ 0.54
CLIP1-215ENST00000541108 MTMR10Q9NXD2 777 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 COX16Q9P0S2 106 aa18.42■□□□□ 0.54
CLIP1-215ENST00000541108 UXTQ9UBK9 157 aaPredicted RBP18.42■□□□□ 0.54
CLIP1-215ENST00000541108 FEZ2Q9UHY8 353 aaPredicted RBP18.42■□□□□ 0.54
CLIP1-215ENST00000541108 MAGED2Q9UNF1 606 aaPredicted RBP18.42■□□□□ 0.54
CLIP1-215ENST00000541108 ARHGEF15O94989 841 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 DNAJB1P25685 340 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 CCR1P32246 355 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 ADCY2Q08462 1091 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 TWF1Q12792 350 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 DHX34Q14147 1143 aaKnown RBP18.41■□□□□ 0.54
CLIP1-215ENST00000541108 PPP2R5DQ14738 602 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 DRICH1Q6PGQ1 229 aaPredicted RBP18.41■□□□□ 0.54
CLIP1-215ENST00000541108 TADA2BQ86TJ2 420 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 TSC1Q92574 1164 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 CASP10Q92851 521 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 PSMG2Q969U7 264 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 GPATCH2LQ9NWQ4 482 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 ARHGEF38Q9NXL2 777 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 TLR6Q9Y2C9 796 aa18.41■□□□□ 0.54
CLIP1-215ENST00000541108 H3BNC9 293 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms