RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 VIMP08670 466 aaKnown RBP14.29□□□□□ -0.12
RTN3-210ENST00000540798 ELK3P41970 407 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 SLC8A3P57103 927 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 YWHAZP63104 245 aaKnown RBP14.29□□□□□ -0.12
RTN3-210ENST00000540798 MDH1BQ5I0G3 518 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 RGS9BPQ6ZS82 235 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 CAPN12Q6ZSI9 719 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 TAB3Q8N5C8 712 aaPredicted RBP14.29□□□□□ -0.12
RTN3-210ENST00000540798 C3orf58Q8NDZ4 430 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 DYDC1Q8WWB3 177 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 GAD1Q99259 594 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 ARHGAP39Q9C0H5 1083 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 RAB6BQ9NRW1 208 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 DDX43Q9NXZ2 648 aaKnown RBP14.29□□□□□ -0.12
RTN3-210ENST00000540798 THSD7BQ9C0I4 1608 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 SF3B1O75533 1304 aaKnown RBP eCLIP14.29□□□□□ -0.126e-9■■■■■ 64.2
RTN3-210ENST00000540798 PTPRDP23468 1912 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 ZNF623O75123 536 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 GHRP10912 638 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 RPL9P32969 192 aaKnown RBP14.28□□□□□ -0.12
RTN3-210ENST00000540798 SULT1E1P49888 294 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 CLCNKBP51801 687 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 FCGRTP55899 365 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 CCSAPQ6IQ19 270 aaPredicted RBP14.28□□□□□ -0.12
RTN3-210ENST00000540798 CAND1Q86VP6 1230 aaKnown RBP14.28□□□□□ -0.12
RTN3-210ENST00000540798 NDRG1Q92597 394 aaKnown RBP14.28□□□□□ -0.12
RTN3-210ENST00000540798 PAFAH2Q99487 392 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 DTLQ9NZJ0 730 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 SAMD15Q9P1V8 674 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 FRMPD3Q5JV73 1810 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 C9IYK1 514 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 RARBP10826 455 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 ACTN3Q08043 901 aaPredicted RBP14.28□□□□□ -0.12
RTN3-210ENST00000540798 DSC3Q14574 896 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 PALM2Q8IXS6 379 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 KLHDC9Q8NEP7 349 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 KLC2Q9H0B6 622 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 AGO3Q9H9G7 860 aaKnown RBP14.28□□□□□ -0.12
RTN3-210ENST00000540798 KIF9Q9HAQ2 790 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 DONSONQ9NYP3 566 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 CACNG4Q9UBN1 327 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 CHMP2BQ9UQN3 213 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 NLRC5Q86WI3 1866 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 HACD1B0YJ81 288 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 GPR182O15218 404 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 FBXO21O94952 628 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 FYNP06241 537 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 FAM200BP0CF97 657 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 TPSB2P20231 275 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 TAC1P20366 129 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 NDUFV1P49821 464 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 LIG3P49916 1009 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 PITX1P78337 314 aaPredicted RBP14.28□□□□□ -0.12
RTN3-210ENST00000540798 TPSAB1Q15661 275 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 UPP1Q16831 310 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 SPRED3Q2MJR0 410 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 CCDC121Q6ZUS5 278 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 ELAC2Q9BQ52 826 aaKnown RBP14.28□□□□□ -0.12
RTN3-210ENST00000540798 ACTR5Q9H9F9 607 aaPredicted RBP14.28□□□□□ -0.12
RTN3-210ENST00000540798 PLAC1Q9HBJ0 212 aa14.28□□□□□ -0.12
RTN3-210ENST00000540798 A0A1W2PPM1 405 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 CCT8L1PA6NM43 557 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 GOT1P17174 413 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 FOXN2P32314 431 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 STX2P32856 288 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 ZNF534Q76KX8 674 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 FAM35AQ86V20 835 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 PYROXD2Q8N2H3 581 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 ANKS4BQ8N8V4 417 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 ZMIZ2Q8NF64 920 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 GDAP1Q8TB36 358 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 LPPQ93052 612 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 SMC6Q96SB8 1091 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 SMOQ99835 787 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 SYT15Q9BQS2 421 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 ETNK1Q9HBU6 452 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 POPDC2Q9HBU9 364 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 MLXIPLQ9NP71 852 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 KRT82Q9NSB4 513 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 FGFR1OP2Q9NVK5 253 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 PRKAG3Q9UGI9 489 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 CDH9Q9ULB4 789 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 PTCH2Q9Y6C5 1203 aa14.27□□□□□ -0.12
RTN3-210ENST00000540798 GOLGA6L7A0A1B0GV03 622 aa14.27□□□□□ -0.13
RTN3-210ENST00000540798 TCRBV9S1A1TA0A576 114 aa14.27□□□□□ -0.13
RTN3-210ENST00000540798 HHLA1C9JL84 531 aa14.27□□□□□ -0.13
RTN3-210ENST00000540798 KBTBD13C9JR72 458 aa14.27□□□□□ -0.13
RTN3-210ENST00000540798 FAM155BO75949 473 aa14.27□□□□□ -0.13
RTN3-210ENST00000540798 ATP2A2P16615 1042 aaKnown RBP14.27□□□□□ -0.13
RTN3-210ENST00000540798 KRT15P19012 456 aa14.27□□□□□ -0.13
RTN3-210ENST00000540798 RNF187Q5TA31 235 aaPredicted RBP14.27□□□□□ -0.13
RTN3-210ENST00000540798 CGB2Q6NT52 195 aa14.27□□□□□ -0.13
RTN3-210ENST00000540798 KCNT2Q6UVM3 1135 aa14.27□□□□□ -0.13
RTN3-210ENST00000540798 LRRC39Q96DD0 335 aa14.27□□□□□ -0.13
RTN3-210ENST00000540798 TGS1Q96RS0 853 aaKnown RBP14.27□□□□□ -0.13
RTN3-210ENST00000540798 SLC9A7Q96T83 725 aa14.27□□□□□ -0.13
RTN3-210ENST00000540798 CYTH2Q99418 400 aa14.27□□□□□ -0.13
RTN3-210ENST00000540798 SPC25Q9HBM1 224 aa14.27□□□□□ -0.13
RTN3-210ENST00000540798 ARHGEF4Q9NR80 690 aa14.27□□□□□ -0.13
RTN3-210ENST00000540798 CTSHP09668 335 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms