RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 MAP7D3Q8IWC1 876 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 EXOC8Q8IYI6 725 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 BEST2Q8NFU1 509 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 TMEM30AQ9NV96 361 aa17.53■□□□□ 0.4
USP28-208ENST00000540438 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.52■□□□□ 0.4
USP28-208ENST00000540438 MYADML2A6NDP7 307 aa17.52■□□□□ 0.4
USP28-208ENST00000540438 VAV1P15498 845 aa17.52■□□□□ 0.4
USP28-208ENST00000540438 TFDP2Q14188 446 aa17.52■□□□□ 0.4
USP28-208ENST00000540438 ADGRD1Q6QNK2 874 aa17.52■□□□□ 0.4
USP28-208ENST00000540438 IQCGQ9H095 443 aaKnown RBP17.52■□□□□ 0.4
USP28-208ENST00000540438 MANSC1Q9H8J5 431 aa17.52■□□□□ 0.4
USP28-208ENST00000540438 ANLNQ9NQW6 1124 aa17.52■□□□□ 0.4
USP28-208ENST00000540438 HEY2Q9UBP5 337 aa17.52■□□□□ 0.4
USP28-208ENST00000540438 C2CD2Q9Y426 696 aa17.52■□□□□ 0.4
USP28-208ENST00000540438 TEX264Q9Y6I9 313 aa17.52■□□□□ 0.4
USP28-208ENST00000540438 MFSD11O43934 449 aa17.52■□□□□ 0.39
USP28-208ENST00000540438 SERPINB3P29508 390 aa17.52■□□□□ 0.39
USP28-208ENST00000540438 KIAA0319Q5VV43 1072 aa17.52■□□□□ 0.39
USP28-208ENST00000540438 UNC5AQ6ZN44 842 aa17.52■□□□□ 0.39
USP28-208ENST00000540438 ALYREFQ86V81 257 aaKnown RBP17.52■□□□□ 0.39
USP28-208ENST00000540438 CSPG4P5Q96PW8 444 aa17.52■□□□□ 0.39
USP28-208ENST00000540438 VTA1Q9NP79 307 aa17.52■□□□□ 0.39
USP28-208ENST00000540438 ZNF358Q9NW07 568 aa17.52■□□□□ 0.39
USP28-208ENST00000540438 KANSL3Q9P2N6 904 aa17.52■□□□□ 0.39
USP28-208ENST00000540438 M0QYT0 321 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 NRP1O14786 923 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 CHUKO15111 745 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 MLH1P40692 756 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 SETDB1Q15047 1291 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 NBPF20Q3BBV1 942 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 LDLRAD1Q5T700 205 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 NOTUMQ6P988 496 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 GPRIN1Q7Z2K8 1008 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 PCGF5Q86SE9 256 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 BANPQ8N9N5 519 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 MTMR10Q9NXD2 777 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 DTLQ9NZJ0 730 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 PSAT1Q9Y617 370 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 PGK1P00558 417 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 GHRP10912 638 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 TPH1P17752 444 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 PCK1P35558 622 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 SNX17Q15036 470 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 GALNTL6Q49A17 601 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 PPM1JQ5JR12 505 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 PPP1R2P3Q6NXS1 205 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 RELL1Q8IUW5 271 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 APPL2Q8NEU8 664 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 TTC8Q8TAM2 541 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 USP33Q8TEY7 942 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 MZB1Q8WU39 189 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 SRPK1Q96SB4 655 aaKnown RBP17.51■□□□□ 0.39
USP28-208ENST00000540438 GAD1Q99259 594 aa17.51■□□□□ 0.39
USP28-208ENST00000540438 NKX1-2Q9UD57 310 aaPredicted RBP17.51■□□□□ 0.39
USP28-208ENST00000540438 MGRN1O60291 552 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 ENTPD5O75356 428 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 ADGRF2Q8IZF7 708 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 CELF6Q96J87 481 aaKnown RBP17.5■□□□□ 0.39
USP28-208ENST00000540438 PPP1R36Q96LQ0 422 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 ZMYND8Q9ULU4 1186 aaPredicted RBP17.5■□□□□ 0.39
USP28-208ENST00000540438 SIP14410 1827 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 COPEO14579 308 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 DIAPH2O60879 1101 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 LYPLA1O75608 230 aaPredicted RBP17.5■□□□□ 0.39
USP28-208ENST00000540438 C6orf222P0C671 652 aaPredicted RBP17.5■□□□□ 0.39
USP28-208ENST00000540438 USP17L7P0C7H9 530 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 DARSP14868 501 aaKnown RBP17.5■□□□□ 0.39
USP28-208ENST00000540438 RCN2Q14257 317 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 FAM187BQ17R55 369 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 HEATR6Q6AI08 1181 aaKnown RBP17.5■□□□□ 0.39
USP28-208ENST00000540438 RFWD3Q6PCD5 774 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 PLEKHH3Q7Z736 793 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 SUGP1Q8IWZ8 645 aaKnown RBP17.5■□□□□ 0.39
USP28-208ENST00000540438 NDUFAF2Q8N183 169 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 SLC7A14Q8TBB6 771 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 TSSK1BQ9BXA7 367 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 C20orf27Q9GZN8 174 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 ZFP69BQ9UJL9 534 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 INPP5FQ9Y2H2 1132 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 ZNF638Q14966 1978 aaKnown RBP17.5■□□□□ 0.39
USP28-208ENST00000540438 SLC15A5A6NIM6 579 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 T-ENOLP0DO92 83 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 ATP2A2P16615 1042 aaKnown RBP17.5■□□□□ 0.39
USP28-208ENST00000540438 MGAT1P26572 445 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 PTPN7P35236 360 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 MFSD10Q14728 455 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 TAZQ16635 292 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 BOLA3Q53S33 107 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 CXCL17Q6UXB2 119 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 SLC4A5Q9BY07 1137 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 ABHD16BQ9H3Z7 469 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 POPDC2Q9HBU9 364 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 SLC24A2Q9UI40 661 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 IPPQ9Y573 584 aa17.5■□□□□ 0.39
USP28-208ENST00000540438 HUS1O60921 280 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 ERVK-10P10266 1014 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 PSMB4P28070 264 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 STIP1P31948 543 aaKnown RBP17.49■□□□□ 0.39
USP28-208ENST00000540438 LILRA4P59901 499 aa17.49■□□□□ 0.39
USP28-208ENST00000540438 PKDCCQ504Y2 493 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms