RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 SLC35G1Q2M3R5 365 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 P3H1Q32P28 736 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 ZNF829Q3KNS6 432 aaPredicted RBP6.95□□□□□ -1.3
USP28-207ENST00000538475 NADK2Q4G0N4 442 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 ARSHQ5FYA8 562 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 FAM47AQ5JRC9 791 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 LRRC38Q5VT99 294 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 IRAK1BP1Q5VVH5 260 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 ACAD10Q6JQN1 1059 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 KLHL35Q6PF15 583 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 FRA10AC1Q70Z53 315 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 ARCQ7LC44 396 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 FBXO33Q7Z6M2 555 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 TPH2Q8IWU9 490 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 FAM71AQ8IYT1 594 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 LSM14AQ8ND56 463 aaKnown RBP6.95□□□□□ -1.3
USP28-207ENST00000538475 RBM15BQ8NDT2 890 aaKnown RBP6.95□□□□□ -1.3
USP28-207ENST00000538475 GLIS3Q8NEA6 775 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 RFWD2Q8NHY2 731 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 ZFP28Q8NHY6 868 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 ZNF420Q8TAQ5 688 aaPredicted RBP6.95□□□□□ -1.3
USP28-207ENST00000538475 GDPD5Q8WTR4 605 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 MZB1Q8WU39 189 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 BSNDQ8WZ55 320 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 HAS1Q92839 578 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 ABTB1Q969K4 478 aaPredicted RBP6.95□□□□□ -1.3
USP28-207ENST00000538475 NXPE3Q969Y0 559 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 CNDP2Q96KP4 475 aaKnown RBP6.95□□□□□ -1.3
USP28-207ENST00000538475 SERPINI1Q99574 410 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 TTC1Q99614 292 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 NUP85Q9BW27 656 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 CCDC106Q9BWC9 280 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 TDRD1Q9BXT4 1180 aaKnown RBP6.95□□□□□ -1.3
USP28-207ENST00000538475 NUF2Q9BZD4 464 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 SENP6Q9GZR1 1112 aaPredicted RBP6.95□□□□□ -1.3
USP28-207ENST00000538475 PCDH9Q9HC56 1237 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 PNPLA8Q9NP80 782 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 SAYSD1Q9NPB0 183 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 ARHGEF4Q9NR80 690 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 MCM9Q9NXL9 1143 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 BIN2Q9UBW5 565 aaPredicted RBP6.95□□□□□ -1.3
USP28-207ENST00000538475 GNPTGQ9UJJ9 305 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 ZNF180Q9UJW8 692 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 GRID1Q9ULK0 1009 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 PRPF19Q9UMS4 504 aaKnown RBP6.95□□□□□ -1.3
USP28-207ENST00000538475 EFR3BQ9Y2G0 817 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 DTNAQ9Y4J8 743 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 WDR81Q562E7 1941 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 SLIT2O94813 1529 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 CLUHO75153 1309 aa6.95□□□□□ -1.3
USP28-207ENST00000538475 PSME4Q14997 1843 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 ARID2Q68CP9 1835 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 TAF1P21675 1872 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 ZNF831Q5JPB2 1677 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 A0A088AWK7 358 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 PNMA6FA0A0J9YX94 578 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 TRIM43BA6NCK2 446 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 TRIM64CA6NLI5 447 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 FOXN3O00409 490 aaPredicted RBP6.94□□□□□ -1.3
USP28-207ENST00000538475 HGSO14964 777 aaPredicted RBP6.94□□□□□ -1.3
USP28-207ENST00000538475 SLC22A2O15244 555 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 CLDN3O15551 220 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 ITM2AO43736 263 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 SLC37A4O43826 429 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 TOM1O60784 492 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 SUPT3HO75486 399 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 BMP10O95393 424 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 MT-ND3P03897 115 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 ITGAVP06756 1048 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 MYL2P10916 166 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 CCDC130P13994 396 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 CDH2P19022 906 aaPredicted RBP6.94□□□□□ -1.3
USP28-207ENST00000538475 RRM1P23921 792 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 ADSLP30566 484 aaPredicted RBP6.94□□□□□ -1.3
USP28-207ENST00000538475 HOXD13P35453 343 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 CPOXP36551 454 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 MARCKSL1P49006 195 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 MFAP3P55082 362 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 NCKAP1LP55160 1127 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 BFSP1Q12934 665 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 ECM1Q16610 540 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 SFT2D3Q587I9 215 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 UBAP2Q5T6F2 1119 aaKnown RBP6.94□□□□□ -1.3
USP28-207ENST00000538475 NIPAL1Q6NVV3 410 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 NEPROQ6NW34 567 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 DUS1LQ6P1R4 473 aaKnown RBP6.94□□□□□ -1.3
USP28-207ENST00000538475 LRRC8BQ6P9F7 803 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 TRIM72Q6ZMU5 477 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 NEK10Q6ZWH5 1172 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 TMC7Q7Z402 723 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 HAUS6Q7Z4H7 955 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 KBTBD6Q86V97 674 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 CRLF3Q8IUI8 442 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 RHOT1Q8IXI2 618 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 SLC15A3Q8IY34 581 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 COLGALT2Q8IYK4 626 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 RCOR2Q8IZ40 523 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 SAMD3Q8N6K7 520 aa6.94□□□□□ -1.3
USP28-207ENST00000538475 GADD45GIP1Q8TAE8 222 aaPredicted RBP6.94□□□□□ -1.3
USP28-207ENST00000538475 LMO3Q8TAP4 145 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms