RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 CATSPER3Q86XQ3 398 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 MMAAQ8IVH4 418 aaKnown RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 SYNE4Q8N205 404 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 LSMEM1Q8N8F7 131 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 EIF1ADQ8N9N8 165 aaKnown RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 PCYOX1LQ8NBM8 494 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 LILRB1Q8NHL6 650 aaPredicted RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 SPATA18Q8TC71 538 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 DENND1AQ8TEH3 1009 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 HTRA1Q92743 480 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 ART4Q93070 314 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 DACT3Q96B18 629 aaPredicted RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 GRAMD1AQ96CP6 724 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 CCDC120Q96HB5 630 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 OXNAD1Q96HP4 312 aaPredicted RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 C8orf48Q96LL4 319 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 SERPINB12Q96P63 405 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 NUDT12Q9BQG2 462 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 HERPUD2Q9BSE4 406 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 KATNAL1Q9BW62 490 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 BCAS3Q9H6U6 928 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 CHST7Q9NS84 486 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 ABI2Q9NYB9 513 aaPredicted RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 HERC5Q9UII4 1024 aaKnown RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 ITGB1BP2Q9UKP3 347 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 ATP11BQ9Y2G3 1177 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 MYO3BQ8WXR4 1341 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 CYP2D7A0A087X1C5 515 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 EXOC1LA0A1B0GW35 172 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 SSU72P8A0A1W2PR75 194 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 SOBPA7XYQ1 873 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 H3BNX3 289 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 hCG_2039718K7EN88 272 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 SNAP23O00161 211 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 AURKAO14965 403 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 CLDN3O15551 220 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 ZBTB24O43167 697 aaPredicted RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 RHOBTB3O94955 611 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 BMP10O95393 424 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 TTC4O95801 387 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 ALDH1A1P00352 501 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 ASNSP08243 561 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 FAM58BPP0C7Q3 252 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 PLS3P13797 630 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 TCN1P20061 433 aaPredicted RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 EPHA3P29320 983 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 CDK9P50750 372 aaKnown RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 ZNF280AP59817 542 aaPredicted RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 TUBA1BP68363 451 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 CTAG1AP78358 180 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 CDK16Q00536 496 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 PRKCEQ02156 737 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 GAD2Q05329 585 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 TRIM28Q13263 835 aaKnown RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 SNTA1Q13424 505 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 APOFQ13790 326 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 MESDQ14696 234 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 PON2Q15165 354 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 FIGNQ5HY92 759 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 IL23RQ5VWK5 629 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 NSMFQ6X4W1 530 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 ZCCHC23Q6ZST2 131 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 TUBA1AQ71U36 451 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 POLNQ7Z5Q5 900 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 NET1Q7Z628 596 aaPredicted RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 CROCCP3Q8IVE0 287 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 CADM2Q8N3J6 435 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 GALNT6Q8NCL4 622 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 FAM156AQ8NDB6 213 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 ZSCAN18Q8TBC5 510 aaPredicted RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 TCP10LQ8TDR4 215 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 CHPT1Q8WUD6 406 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 MARK4Q96L34 752 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 CDK5RAP1Q96SZ6 601 aaKnown RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 TCF12Q99081 682 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 CIB1Q99828 191 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 C17orf80Q9BSJ5 609 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 PHF20Q9BVI0 1012 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 OSBPL8Q9BZF1 889 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 DCLK3Q9C098 648 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 THAP2Q9H0W7 228 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 SAR1AQ9NR31 198 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 THAP1Q9NVV9 213 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 HOXC10Q9NYD6 342 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 NDUFA13Q9P0J0 144 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 ANKFY1Q9P2R3 1169 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 DNMT3BQ9UBC3 853 aaKnown RBP3.85□□□□□ -1.79
MCF2-210ENST00000536274 ZNHIT2Q9UHR6 403 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 ZNRF3Q9ULT6 936 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 ZMYM2Q9UBW7 1377 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 A8MXQ7 604 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 CFAP99D6REC4 459 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 FSCN2O14926 492 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 NMT2O60551 498 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 LRRN2O75325 713 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 SEMA3DO95025 777 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 ZWINTO95229 277 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 DEXIO95424 95 aa3.85□□□□□ -1.79
MCF2-210ENST00000536274 TTLL1O95922 423 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms