RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 TRUB2O95900 331 aaKnown RBP14.31□□□□□ -0.12
CD44-224ENST00000526669 PSMA2P25787 234 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 SDC4P31431 198 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 AVPR1AP37288 418 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 NOP2P46087 812 aaKnown RBP14.31□□□□□ -0.12
CD44-224ENST00000526669 ZNF252P-AS1Q0IIN9 211 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 NME3Q13232 169 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 SMAD2Q15796 467 aaKnown RBP14.31□□□□□ -0.12
CD44-224ENST00000526669 CCDC14Q49A88 953 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 FAM78AQ5JUQ0 283 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 SH3PXD2AQ5TCZ1 1133 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 TADA2BQ86TJ2 420 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 CPNE8Q86YQ8 564 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 ARID3BQ8IVW6 561 aaPredicted RBP14.31□□□□□ -0.12
CD44-224ENST00000526669 RFFLQ8WZ73 363 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 RPGRIP1Q96KN7 1286 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 CDK5RAP1Q96SZ6 601 aaKnown RBP14.31□□□□□ -0.12
CD44-224ENST00000526669 TRIM62Q9BVG3 475 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 SMOC2Q9H3U7 446 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 DDIT4Q9NX09 232 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 CALCOCO1Q9P1Z2 691 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 SALL4Q9UJQ4 1053 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 DNMT3LQ9UJW3 386 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 STAP1Q9ULZ2 295 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 DUSP10Q9Y6W6 482 aa14.31□□□□□ -0.12
CD44-224ENST00000526669 TMEM191CA6NGB0 347 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 M0QYT0 321 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 PJA2O43164 708 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 IRAK2O43187 625 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 OLFM2O95897 454 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 CCDC175P0C221 793 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 VIPR2P41587 438 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 ZXDBP98169 803 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 DAB2IPQ5VWQ8 1189 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 TDRD5Q8NAT2 981 aaKnown RBP14.3□□□□□ -0.12
CD44-224ENST00000526669 RIN3Q8TB24 985 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 FAM172AQ8WUF8 416 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 USP13Q92995 863 aaPredicted RBP14.3□□□□□ -0.12
CD44-224ENST00000526669 RSPRY1Q96DX4 576 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 ZFRQ96KR1 1074 aaKnown RBP14.3□□□□□ -0.12
CD44-224ENST00000526669 ASB16Q96NS5 453 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 NPY6RQ99463 290 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 PHF7Q9BWX1 381 aaPredicted RBP14.3□□□□□ -0.12
CD44-224ENST00000526669 KLF16Q9BXK1 252 aaPredicted RBP14.3□□□□□ -0.12
CD44-224ENST00000526669 UVRAGQ9P2Y5 699 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 USTQ9Y2C2 406 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 PPP2R2CQ9Y2T4 447 aa14.3□□□□□ -0.12
CD44-224ENST00000526669 MACROD2A1Z1Q3 448 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 LEFTY2O00292 366 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 DPYSL4O14531 572 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 LAMP2P13473 410 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 NAP1L1P55209 391 aaKnown RBP14.29□□□□□ -0.12
CD44-224ENST00000526669 TBX4P57082 545 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 SLC7A9P82251 487 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 DEUP1Q05D60 604 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 MESDQ14696 234 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 SLC25A52Q3SY17 297 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 TANGO2Q6ICL3 276 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 BEND5Q7L4P6 421 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 OTOP3Q7RTS5 596 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 RHOT2Q8IXI1 618 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 ZNF276Q8N554 614 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 ADAMTS19Q8TE59 1207 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 SH3RF2Q8TEC5 729 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 SMARCD2Q92925 531 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 RNF34Q969K3 372 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 ACSF2Q96CM8 615 aaPredicted RBP14.29□□□□□ -0.12
CD44-224ENST00000526669 SERPINB11Q96P15 392 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 KXD1Q9BQD3 176 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 LZTFL1Q9NQ48 299 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 TDP1Q9NUW8 608 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.29□□□□□ -0.12
CD44-224ENST00000526669 GDE1Q9NZC3 331 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 CFAP97Q9P2B7 532 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 PAXBP1Q9Y5B6 917 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 COL4A3Q01955 1670 aa14.29□□□□□ -0.12
CD44-224ENST00000526669 MYO18AQ92614 2054 aaKnown RBP14.29□□□□□ -0.12
CD44-224ENST00000526669 MOCS3O95396 460 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 MOCS2O96007 188 aaPredicted RBP14.28□□□□□ -0.12
CD44-224ENST00000526669 IGLV3-25P01717 112 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 PFKLP17858 780 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 FCARP24071 287 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 GBP1P32455 592 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 PTPN9P43378 593 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 ZNF143P52747 638 aaPredicted RBP14.28□□□□□ -0.12
CD44-224ENST00000526669 KIF5AQ12840 1032 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 USP4Q13107 963 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 TRIP4Q15650 581 aaPredicted RBP14.28□□□□□ -0.12
CD44-224ENST00000526669 PUS10Q3MIT2 529 aaKnown RBP14.28□□□□□ -0.12
CD44-224ENST00000526669 ZC3H12AQ5D1E8 599 aaKnown RBP14.28□□□□□ -0.12
CD44-224ENST00000526669 SCYL2Q6P3W7 929 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 KLHDC10Q6PID8 442 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 PARM1Q6UWI2 310 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 ARCQ7LC44 396 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 FAM131BQ86XD5 332 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 FGF14Q92915 247 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 FCRL2Q96LA5 508 aaPredicted RBP14.28□□□□□ -0.12
CD44-224ENST00000526669 CNPY3Q9BT09 278 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 PLA2G2FQ9BZM2 168 aa14.28□□□□□ -0.12
CD44-224ENST00000526669 GOLPH3Q9H4A6 298 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms