RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 GTPBP10A4D1E9 387 aaKnown RBP5.3□□□□□ -1.56
CD44-220ENST00000525688 ZAR1LA6NP61 321 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 NCAM2O15394 837 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 CDKL5O76039 1030 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 ACTL6BO94805 426 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 VIPP01282 170 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 IFIT1P09914 478 aaKnown RBP5.3□□□□□ -1.56
CD44-220ENST00000525688 HGFP14210 728 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 UBA7P41226 1012 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 RAD52P43351 418 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 GATMP50440 423 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 ALDH18A1P54886 795 aaKnown RBP5.3□□□□□ -1.56
CD44-220ENST00000525688 GPS1Q13098 491 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 TAF5Q15542 800 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 GALNT5Q7Z7M9 940 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 TBC1D1Q86TI0 1168 aaPredicted RBP5.3□□□□□ -1.56
CD44-220ENST00000525688 DTX2Q86UW9 622 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 MOGAT3Q86VF5 341 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 CPEB3Q8NE35 698 aaKnown RBP5.3□□□□□ -1.56
CD44-220ENST00000525688 USP13Q92995 863 aaPredicted RBP5.3□□□□□ -1.56
CD44-220ENST00000525688 SDCCAG3Q96C92 435 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 RNF31Q96EP0 1072 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 MYEOVQ96EZ4 313 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 HIST1H2AAQ96QV6 131 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 ADAM2Q99965 735 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 RTKNQ9BST9 563 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 FAM167BQ9BTA0 163 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 MLXIPQ9HAP2 919 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 CEP72Q9P209 647 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 KIF17Q9P2E2 1029 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 LPAR3Q9UBY5 353 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 SERTAD3Q9UJW9 196 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 TMCC3Q9ULS5 477 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 MAP3K2Q9Y2U5 619 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 DAPK1P53355 1430 aa5.3□□□□□ -1.56
CD44-220ENST00000525688 DNMT1P26358 1616 aaKnown RBP5.3□□□□□ -1.56
CD44-220ENST00000525688 RIMS1Q86UR5 1692 aaKnown RBP5.29□□□□□ -1.56
CD44-220ENST00000525688 TRGV11A0A075B6L2 103 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 TMEM200CA6NKL6 621 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 FCHO1O14526 889 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 DNPH1O43598 174 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 PLOD3O60568 738 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 USP1O94782 785 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 SRGAP2BP0DMP2 458 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 HOXA5P20719 270 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 DDX6P26196 483 aaKnown RBP eCLIP5.29□□□□□ -1.56
CD44-220ENST00000525688 ZFP36P26651 326 aaKnown RBP5.29□□□□□ -1.56
CD44-220ENST00000525688 ADORA2AP29274 412 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 TDO2P48775 406 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 MMP14P50281 582 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 ATXN1P54253 815 aaKnown RBP5.29□□□□□ -1.56
CD44-220ENST00000525688 TIRAPP58753 221 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 AP2B1P63010 937 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 MPP1Q00013 466 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 G3BP1Q13283 466 aaKnown RBP eCLIP5.29□□□□□ -1.56
CD44-220ENST00000525688 CLCA4Q14CN2 919 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 TIGD6Q17RP2 521 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 SLC10A5Q5PT55 438 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 SPATA1Q5VX52 437 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 FAAH2Q6GMR7 532 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 RETSATQ6NUM9 610 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 CCDC117Q8IWD4 279 aaPredicted RBP5.29□□□□□ -1.56
CD44-220ENST00000525688 SUN3Q8TAQ9 357 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 TMEM171Q8WVE6 324 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 OSCP1Q8WVF1 389 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 ATG4AQ8WYN0 398 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 GRAMD1AQ96CP6 724 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 ZBTB10Q96DT7 871 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 LOXL4Q96JB6 756 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 PRKRIP1Q9H875 184 aaPredicted RBP5.29□□□□□ -1.56
CD44-220ENST00000525688 TRIM36Q9NQ86 728 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 SMC4Q9NTJ3 1288 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 PARPBPQ9NWS1 579 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 RRN3Q9NYV6 651 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.29□□□□□ -1.56
CD44-220ENST00000525688 SNX14Q9Y5W7 946 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 FER1L4A9Z1Z3 1794 aa5.29□□□□□ -1.56
CD44-220ENST00000525688 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP5.29□□□□□ -1.56
CD44-220ENST00000525688 CROCC2H7BZ55 1655 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 BTBD11A6QL63 1104 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 AGPSO00116 658 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 EIF3FO00303 357 aaPredicted RBP5.28□□□□□ -1.56
CD44-220ENST00000525688 MUSKO15146 869 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 PLSCR1O15162 318 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 ZSCAN9O15535 394 aaPredicted RBP5.28□□□□□ -1.56
CD44-220ENST00000525688 FAM20BO75063 409 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 CBFA2T3O75081 653 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 NDUFA10O95299 355 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 PEX11BO96011 259 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 PYGLP06737 847 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 NR4A1P22736 598 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 RPS6KB1P23443 525 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 RBL1P28749 1068 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 HTR7P34969 479 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 PEX19P40855 299 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 KRT83P78385 493 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 SLC25A3Q00325 362 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 ACOX1Q15067 660 aa5.28□□□□□ -1.56
CD44-220ENST00000525688 ATPAF1Q5TC12 328 aaPredicted RBP5.28□□□□□ -1.56
CD44-220ENST00000525688 ZNF585AQ6P3V2 769 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms