RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 HK1P19367 917 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 DNAJB2P25686 324 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 PSMC2P35998 433 aaKnown RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 SRP54P61011 504 aaKnown RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 RPS7P62081 194 aaKnown RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 PHC1P78364 1004 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 FKBP3Q00688 224 aaKnown RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 GALK2Q01415 458 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 VAC14Q08AM6 782 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 LIN52Q52LA3 116 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 SAMD4BQ5PRF9 694 aaKnown RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 CERCAMQ5T4B2 595 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 ARL6IP4Q66PJ3 421 aaKnown RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 PAOXQ6QHF9 649 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 ARCQ7LC44 396 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 CABP7Q86V35 215 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 MICU3Q86XE3 530 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 RTKN2Q8IZC4 609 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 CARNMT1Q8N4J0 409 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 EPS8L3Q8TE67 593 aaKnown RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 ATG4AQ8WYN0 398 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 IRGQQ8WZA9 623 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 CENPIQ92674 756 aaPredicted RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 P2RX5Q93086 422 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 SLC41A3Q96GZ6 507 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 APOPT1Q96IL0 206 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 ZNF597Q96LX8 424 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 SCGB3A2Q96PL1 93 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 CGREF1Q99674 301 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 TMEM79Q9BSE2 394 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 TIPINQ9BVW5 301 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 RNF32Q9H0A6 362 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 KIAA1586Q9HCI6 787 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 CYLDQ9NQC7 956 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 RASSF1Q9NS23 344 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 ADPRHL2Q9NX46 363 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 MAT2BQ9NZL9 334 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 BFARQ9NZS9 450 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 HESX1Q9UBX0 185 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 CCNL1Q9UK58 526 aaPredicted RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 RAB21Q9UL25 225 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 NSFL1CQ9UNZ2 370 aaKnown RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 MAB21L2Q9Y586 359 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 METP08581 1390 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 PHF20L1A8MW92 1017 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 WDR64B1ANS9 1081 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 C5orf58C9J3I9 102 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 H3BM21 787 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 H3BQF6 201 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 IFRD1O00458 451 aaPredicted RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 SSX5O60225 188 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 MGRN1O60291 552 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 CST8O60676 142 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 MAP3K6O95382 1288 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 IFNB1P01574 187 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 PORP16435 677 aaPredicted RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 PRKACBP22694 351 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 ATP2B4P23634 1241 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 PTX3P26022 381 aaPredicted RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 MNDAP41218 407 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 GRIA1P42261 906 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 RAB27AP51159 221 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 CCR3P51677 355 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 AP3M2P53677 418 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 PRMT2P55345 433 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 NPEPPSP55786 919 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 SMIM11AP58511 58 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 ELF3P78545 371 aaPredicted RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 ARF5P84085 180 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 IL18R1Q13478 541 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 SEMA3AQ14563 771 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 SLC39A14Q15043 492 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 PKN1Q16512 942 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 NAALADL2Q58DX5 795 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 NKAPLQ5M9Q1 402 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 SLC9C2Q5TAH2 1124 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 KRT26Q7Z3Y9 468 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 PTAR1Q7Z6K3 402 aaPredicted RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 RFX6Q8HWS3 928 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 NELFCDQ8IXH7 590 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 BPIFB6Q8NFQ5 453 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 UBASH3BQ8TF42 649 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 TGFBRAP1Q8WUH2 860 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 NAT14Q8WUY8 206 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 RAD54LQ92698 747 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 HDAC2Q92769 488 aaKnown RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 ZNF496Q96IT1 587 aaPredicted RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 LURAP1Q96LR2 239 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 KCTD15Q96SI1 283 aaPredicted RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 TMEM106CQ9BVX2 250 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 CCDC106Q9BWC9 280 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 FN3KQ9H479 309 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 ELOVL6Q9H5J4 265 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 RANBP3Q9H6Z4 567 aaPredicted RBP3.67□□□□□ -1.82
USP53-205ENST00000509769 MANSC1Q9H8J5 431 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 ARHGEF10LQ9HCE6 1279 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 NPHS2Q9NP85 383 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 SAYSD1Q9NPB0 183 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 ATP8A2Q9NTI2 1148 aa3.67□□□□□ -1.82
USP53-205ENST00000509769 POLR3BQ9NW08 1133 aaPredicted RBP3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms