RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 SPPL3Q8TCT6 385 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 SLC25A43Q8WUT9 341 aaPredicted RBP4.54□□□□□ -1.68
USP54-217ENST00000498213 CHAC2Q8WUX2 184 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 POF1BQ8WVV4 589 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 CTAGE1Q96RT6 745 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 FDXACB1Q9BRP7 624 aaPredicted RBP4.54□□□□□ -1.68
USP54-217ENST00000498213 KCTD10Q9H3F6 313 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 CAAP1Q9H8G2 361 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 DLGAP2Q9P1A6 1054 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 NYAP2Q9P242 653 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 EIF2B4Q9UI10 523 aaKnown RBP4.54□□□□□ -1.68
USP54-217ENST00000498213 DBNLQ9UJU6 430 aaKnown RBP4.54□□□□□ -1.68
USP54-217ENST00000498213 RAB23Q9ULC3 237 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 PA2G4Q9UQ80 394 aaKnown RBP4.54□□□□□ -1.68
USP54-217ENST00000498213 PCDHGA2Q9Y5H1 932 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 LAMA5O15230 3695 aa4.54□□□□□ -1.68
USP54-217ENST00000498213 CFAP46Q8IYW2 2715 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 CACNA1IQ9P0X4 2223 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 ZBED9Q6R2W3 1325 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 VWA5AO00534 786 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 NEMP1O14524 444 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 DNAJC6O75061 913 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 RETP07949 1114 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 SLC3A2P08195 630 aaKnown RBP4.53□□□□□ -1.68
USP54-217ENST00000498213 MMP3P08254 477 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 LTA4HP09960 611 aaKnown RBP4.53□□□□□ -1.68
USP54-217ENST00000498213 PCP11498 1178 aaKnown RBP4.53□□□□□ -1.68
USP54-217ENST00000498213 BPIP17213 487 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 HSD3B2P26439 372 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 GZMKP49863 264 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 NOVA1P51513 510 aaKnown RBP4.53□□□□□ -1.68
USP54-217ENST00000498213 LGALS4P56470 323 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 ICA1Q05084 483 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 TOB2Q14106 344 aaPredicted RBP4.53□□□□□ -1.68
USP54-217ENST00000498213 BTG3Q14201 252 aaPredicted RBP4.53□□□□□ -1.68
USP54-217ENST00000498213 CSRP2Q16527 193 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 SMN1Q16637 294 aaKnown RBP4.53□□□□□ -1.68
USP54-217ENST00000498213 AASDHQ4L235 1098 aaPredicted RBP4.53□□□□□ -1.68
USP54-217ENST00000498213 CT83Q5H943 113 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 RABL3Q5HYI8 236 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 SLC9C2Q5TAH2 1124 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 C12orf60Q5U649 245 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 SNRNP48Q6IEG0 339 aaKnown RBP4.53□□□□□ -1.68
USP54-217ENST00000498213 SDE2Q6IQ49 451 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 TAPT1Q6NXT6 567 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 FAM160B2Q86V87 743 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 THNSL2Q86YJ6 484 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 FTSJ3Q8IY81 847 aaKnown RBP4.53□□□□□ -1.68
USP54-217ENST00000498213 ZNF276Q8N554 614 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 ZBTB44Q8NCP5 570 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 GMCL1P1Q8NEA9 526 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 CPT1CQ8TCG5 803 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 CHFRQ96EP1 664 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 ACAP3Q96P50 834 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 RXFP3Q9NSD7 469 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 ZSCAN32Q9NX65 697 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 MCM9Q9NXL9 1143 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 EVLQ9UI08 416 aaPredicted RBP4.53□□□□□ -1.68
USP54-217ENST00000498213 FEM1BQ9UK73 627 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 DUSP12Q9UNI6 340 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 CDY2AQ9Y6F7 541 aa4.53□□□□□ -1.68
USP54-217ENST00000498213 UBR5O95071 2799 aaPredicted RBP4.53□□□□□ -1.68
USP54-217ENST00000498213 RAD50Q92878 1312 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 WDFY3Q8IZQ1 3526 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 PNMA6EA0A0J9YXQ4 647 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 A0A1W2PR48 441 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 BRINP1O60477 761 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 ZBED4O75132 1171 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 PPFIA4O75335 1185 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 SCAF4O95104 1147 aaKnown RBP4.52□□□□□ -1.69
USP54-217ENST00000498213 ATP5JP18859 108 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 CPT1AP50416 773 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 MRPL49Q13405 166 aaKnown RBP4.52□□□□□ -1.69
USP54-217ENST00000498213 TRIM25Q14258 630 aaKnown RBP4.52□□□□□ -1.69
USP54-217ENST00000498213 SF3A2Q15428 464 aaKnown RBP4.52□□□□□ -1.69
USP54-217ENST00000498213 DUSP6Q16828 381 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.52□□□□□ -1.69
USP54-217ENST00000498213 ZNF528Q3MIS6 628 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 PITRM1Q5JRX3 1037 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 FNDC7Q5VTL7 733 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 IQSEC1Q6DN90 963 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 LAIR1Q6GTX8 287 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 CES5AQ6NT32 575 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 PDZD4Q76G19 769 aaPredicted RBP4.52□□□□□ -1.69
USP54-217ENST00000498213 ADGRA1Q86SQ6 560 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 AMER2Q8N7J2 671 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 C12orf76Q8N812 135 aaPredicted RBP4.52□□□□□ -1.69
USP54-217ENST00000498213 CLRN3Q8NCR9 226 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 REPS2Q8NFH8 660 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 OR6J1Q8NGC5 347 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 CHURC1Q8WUH1 139 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 HAS1Q92839 578 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 EAF2Q96CJ1 260 aaPredicted RBP4.52□□□□□ -1.69
USP54-217ENST00000498213 GPATCH3Q96I76 525 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 RAX2Q96IS3 184 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 SLF1Q9BQI6 1058 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 CLMPQ9H6B4 373 aa4.52□□□□□ -1.69
USP54-217ENST00000498213 PIH1D3Q9NQM4 214 aaKnown RBP4.52□□□□□ -1.69
USP54-217ENST00000498213 TOPORSQ9NS56 1045 aaPredicted RBP4.52□□□□□ -1.69
USP54-217ENST00000498213 HOMER2Q9NSB8 354 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms