RNA–Protein interactions for RNA: ENST00000497580.5

GAPVD1-220, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 2

Gene GAPVD1, Length 3,720 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-220ENST00000497580 CENPSQ8N2Z9 138 aa13.5□□□□□ -0.25
GAPVD1-220ENST00000497580 VPS50Q96JG6 964 aa13.5□□□□□ -0.25
GAPVD1-220ENST00000497580 NRDE2Q9H7Z3 1164 aa13.5□□□□□ -0.25
GAPVD1-220ENST00000497580 RAB6BQ9NRW1 208 aa13.5□□□□□ -0.25
GAPVD1-220ENST00000497580 IP6K2Q9UHH9 426 aa13.5□□□□□ -0.25
GAPVD1-220ENST00000497580 SCAF8Q9UPN6 1271 aaKnown RBP13.5□□□□□ -0.25
GAPVD1-220ENST00000497580 TMA7Q9Y2S6 64 aaKnown RBP13.5□□□□□ -0.25
GAPVD1-220ENST00000497580 PCDHB2Q9Y5E7 798 aa13.5□□□□□ -0.25
GAPVD1-220ENST00000497580 PSMD12O00232 456 aaPredicted RBP13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 OXSR1O95747 527 aaPredicted RBP13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 CDH3P22223 829 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 CEP55Q53EZ4 464 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 PGM2L1Q6PCE3 622 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 LILRA2Q8N149 483 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 TMA16Q96EY4 203 aaKnown RBP13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 TUFT1Q9NNX1 390 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 SLC17A6Q9P2U8 582 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 ZNRF3Q9ULT6 936 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 DAGLAQ9Y4D2 1042 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 SPATA31A5Q5VU36 1347 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 SPATA31A6Q5VVP1 1343 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 SPATA31A7Q8IWB4 1347 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 H7C0C1 242 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 P4HBP07237 508 aaKnown RBP13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 CD48P09326 243 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 EPHA3P29320 983 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 SREBF1P36956 1147 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 ATP5OP48047 213 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 NT5C2P49902 561 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 EML3Q32P44 896 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 EGFLAMQ63HQ2 1017 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 UTS2BQ765I0 119 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 SNX32Q86XE0 403 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 PPWD1Q96BP3 646 aaKnown RBP13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 NGLY1Q96IV0 654 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 FAM213AQ9BRX8 229 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 TMEM8AQ9HCN3 771 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 TRPC7Q9HCX4 862 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 SCINQ9Y6U3 715 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 KLF11O14901 512 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 HLA-DOAP06340 250 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 BCAP31P51572 246 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 NXNQ6DKJ4 435 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 ELMSAN1Q6PJG2 1045 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 RAVER1Q8IY67 606 aaKnown RBP13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 ZNF786Q8N393 782 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 ZNF778Q96MU6 729 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 GCOM2Q9BZD3 368 aaPredicted RBP13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 NDEL1Q9GZM8 345 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 DBNDD1Q9H9R9 158 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 ITGA11Q9UKX5 1188 aa13.49□□□□□ -0.25
GAPVD1-220ENST00000497580 UBE4BO95155 1302 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 ITGAVP06756 1048 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 ECE1P42892 770 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 PHKA2P46019 1235 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 RHBDL3P58872 404 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 MRPS9P82933 396 aaKnown RBP13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 BNIP3Q12983 259 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 APOFQ13790 326 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 CASC4Q6P4E1 433 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 NPNTQ6UXI9 565 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 FAM196AQ6ZSG2 479 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 C12orf43Q96C57 262 aaKnown RBP13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 RMND5BQ96G75 393 aaPredicted RBP13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 MBOAT7Q96N66 472 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 SIRPGQ9P1W8 387 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 TCEAL9Q9UHQ7 104 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 DRG1Q9Y295 367 aaKnown RBP13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 AFG3L2Q9Y4W6 797 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 A0A1W2PPW3 197 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 SLC26A4O43511 780 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 KRT38O76015 456 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 APRTP07741 180 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 ARP10275 920 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 HMOX2P30519 316 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 IDH3AP50213 366 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 ITGADQ13349 1161 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 N4BP2L1Q5TBK1 243 aaPredicted RBP13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 BSPRYQ5W0U4 402 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 POTEAQ6S8J7 498 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 MARK4Q96L34 752 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 LENG8Q96PV6 779 aaPredicted RBP13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 MPHOSPH6Q99547 160 aaKnown RBP13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 PARVAQ9NVD7 372 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 LAMB1P07942 1786 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 CROCCQ5TZA2 2017 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 MCF2LO15068 1137 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 KDM1AO60341 852 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 CAPN15O75808 1086 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 CSH1P0DML2 217 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 CSH2P0DML3 217 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 GPR107Q5VW38 600 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 TRMT10BQ6PF06 316 aaKnown RBP13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 DEPDC1BQ8WUY9 529 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 ATXN7L3BQ96GX2 97 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 ZC3H12CQ9C0D7 883 aaKnown RBP13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 PLK2Q9NYY3 685 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 SSX2IPQ9Y2D8 614 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 STK24Q9Y6E0 443 aa13.48□□□□□ -0.25
GAPVD1-220ENST00000497580 EP400Q96L91 3159 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms