RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 ZNF677Q86XU0 584 aa17.11■□□□□ 0.33
SF3A1-209ENST00000496189 SCUBE3Q8IX30 993 aa17.11■□□□□ 0.33
SF3A1-209ENST00000496189 IQCDQ96DY2 449 aa17.11■□□□□ 0.33
SF3A1-209ENST00000496189 CHFRQ96EP1 664 aa17.11■□□□□ 0.33
SF3A1-209ENST00000496189 PPP1R13BQ96KQ4 1090 aa17.11■□□□□ 0.33
SF3A1-209ENST00000496189 PNKPQ96T60 521 aa17.11■□□□□ 0.33
SF3A1-209ENST00000496189 NUP58Q9BVL2 599 aa17.11■□□□□ 0.33
SF3A1-209ENST00000496189 SLC4A5Q9BY07 1137 aa17.11■□□□□ 0.33
SF3A1-209ENST00000496189 APODP05090 189 aa17.1■□□□□ 0.33
SF3A1-209ENST00000496189 SOX5P35711 763 aa17.1■□□□□ 0.33
SF3A1-209ENST00000496189 CXCL12P48061 93 aa17.1■□□□□ 0.33
SF3A1-209ENST00000496189 RPL34P49207 117 aaKnown RBP17.1■□□□□ 0.33
SF3A1-209ENST00000496189 CSTF1Q05048 431 aaKnown RBP17.1■□□□□ 0.33
SF3A1-209ENST00000496189 EFHC1Q5JVL4 640 aa17.1■□□□□ 0.33
SF3A1-209ENST00000496189 RHBDF2Q6PJF5 856 aa17.1■□□□□ 0.33
SF3A1-209ENST00000496189 UNC45BQ8IWX7 931 aa17.1■□□□□ 0.33
SF3A1-209ENST00000496189 ZNF687Q8N1G0 1237 aa17.1■□□□□ 0.33
SF3A1-209ENST00000496189 C1orf131Q8NDD1 294 aaKnown RBP17.1■□□□□ 0.33
SF3A1-209ENST00000496189 CLEC4CQ8WTT0 213 aa17.1■□□□□ 0.33
SF3A1-209ENST00000496189 SERPINB11Q96P15 392 aa17.1■□□□□ 0.33
SF3A1-209ENST00000496189 BBS2Q9BXC9 721 aa17.1■□□□□ 0.33
SF3A1-209ENST00000496189 POPDC2Q9HBU9 364 aa17.1■□□□□ 0.33
SF3A1-209ENST00000496189 RBM12Q9NTZ6 932 aaKnown RBP17.1■□□□□ 0.33
SF3A1-209ENST00000496189 DEC1Q9P2X7 70 aa17.1■□□□□ 0.33
SF3A1-209ENST00000496189 MYO6Q9UM54 1294 aa17.1■□□□□ 0.33
SF3A1-209ENST00000496189 F5P12259 2224 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 NEDD8-MDP1E9PL57 170 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 HOXC11O43248 304 aaPredicted RBP17.09■□□□□ 0.33
SF3A1-209ENST00000496189 GFPT2O94808 682 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 LSM8O95777 96 aaKnown RBP17.09■□□□□ 0.33
SF3A1-209ENST00000496189 JAM2P57087 298 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 YWHAZP63104 245 aaKnown RBP17.09■□□□□ 0.33
SF3A1-209ENST00000496189 FZD5Q13467 585 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 ZNF528Q3MIS6 628 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 TAF3Q5VWG9 929 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 NUGGCQ68CJ6 796 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 OR6B2Q6IFH4 312 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 FSTL4Q6MZW2 842 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 MSANTD2Q6P1R3 559 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 MAMSTRQ6ZN01 415 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 TPGS1Q6ZTW0 290 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 BEND5Q7L4P6 421 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 BHLHA9Q7RTU4 235 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 ZDHHC17Q8IUH5 632 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 DENND1CQ8IV53 801 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 ACDQ96AP0 544 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 FAM126AQ9BYI3 521 aaPredicted RBP17.09■□□□□ 0.33
SF3A1-209ENST00000496189 EDEM3Q9BZQ6 932 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 ARHGEF4Q9NR80 690 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 SFMBT1Q9UHJ3 866 aa17.09■□□□□ 0.33
SF3A1-209ENST00000496189 EPHB6O15197 1021 aa17.08■□□□□ 0.32
SF3A1-209ENST00000496189 RNF40O75150 1001 aa17.08■□□□□ 0.32
SF3A1-209ENST00000496189 EGFP01133 1207 aa17.08■□□□□ 0.32
SF3A1-209ENST00000496189 GLI1P08151 1106 aa17.08■□□□□ 0.32
SF3A1-209ENST00000496189 SLC11A2P49281 568 aa17.08■□□□□ 0.32
SF3A1-209ENST00000496189 TRIP4Q15650 581 aaPredicted RBP17.08■□□□□ 0.32
SF3A1-209ENST00000496189 Q6ZNB5 142 aa17.08■□□□□ 0.32
SF3A1-209ENST00000496189 TMEM25Q86YD3 366 aa17.08■□□□□ 0.32
SF3A1-209ENST00000496189 ZNF397Q8NF99 534 aaPredicted RBP17.08■□□□□ 0.32
SF3A1-209ENST00000496189 DDX50Q9BQ39 737 aaKnown RBP17.08■□□□□ 0.32
SF3A1-209ENST00000496189 XPO4Q9C0E2 1151 aaKnown RBP17.08■□□□□ 0.32
SF3A1-209ENST00000496189 CYTH4Q9UIA0 394 aa17.08■□□□□ 0.32
SF3A1-209ENST00000496189 SLC8A2Q9UPR5 921 aa17.08■□□□□ 0.32
SF3A1-209ENST00000496189 TYW5A2RUC4 315 aaKnown RBP17.07■□□□□ 0.32
SF3A1-209ENST00000496189 TBC1D3BA6NDS4 549 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 PAPSS1O43252 624 aaPredicted RBP17.07■□□□□ 0.32
SF3A1-209ENST00000496189 HSF2BPO75031 334 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 KAT7O95251 611 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 LATS1O95835 1130 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 SP9P0CG40 484 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 TYRP14679 529 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 FERP16591 822 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 GBP1P32455 592 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 OPRD1P41143 372 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 GRIA2P42262 883 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 TBX4P57082 545 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 KDSRQ06136 332 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 NNTQ13423 1086 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 FIGNQ5HY92 759 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 GRAMD4Q6IC98 578 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 Q6ZS52 159 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 ERICH1Q86X53 443 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 NAT16Q8N8M0 369 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 EPS8L1Q8TE68 723 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 ATRIPQ8WXE1 791 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 WBP2Q969T9 261 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 CPXM1Q96SM3 734 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 NUCKS1Q9H1E3 243 aaKnown RBP17.07■□□□□ 0.32
SF3A1-209ENST00000496189 PRMT8Q9NR22 394 aaPredicted RBP17.07■□□□□ 0.32
SF3A1-209ENST00000496189 FAM86C1Q9NVL1 165 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 DNAJC17Q9NVM6 304 aaKnown RBP17.07■□□□□ 0.32
SF3A1-209ENST00000496189 ASNSD1Q9NWL6 643 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 MARK1Q9P0L2 795 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 AGO1Q9UL18 857 aaKnown RBP17.07■□□□□ 0.32
SF3A1-209ENST00000496189 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.07■□□□□ 0.321e-7■□□□□ 9.2
SF3A1-209ENST00000496189 MUC6Q6W4X9 2439 aa17.07■□□□□ 0.32
SF3A1-209ENST00000496189 MSI1O43347 362 aaKnown RBP17.06■□□□□ 0.32
SF3A1-209ENST00000496189 GREM1O60565 184 aa17.06■□□□□ 0.32
SF3A1-209ENST00000496189 GABBR2O75899 941 aa17.06■□□□□ 0.32
SF3A1-209ENST00000496189 APOEP02649 317 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms