RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 MBD3L2Q8NHZ7 208 aaPredicted RBP3.68□□□□□ -1.82
CPSF3-205ENST00000489629 MPLKIPQ8TAP9 179 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 SUN3Q8TAQ9 357 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 BCAS4Q8TDM0 211 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 ZCWPW1Q9H0M4 648 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 ZNF212Q9UDV6 495 aa3.68□□□□□ -1.82
CPSF3-205ENST00000489629 CCDC187A0A096LP49 1063 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 H3BNX3 289 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 INPPL1O15357 1258 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 TSPAN6O43657 245 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 MGEA5O60502 916 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 CBFA2T3O75081 653 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 TULP3O75386 442 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 WDR47O94967 919 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 RPL17P18621 184 aaKnown RBP3.67□□□□□ -1.82
CPSF3-205ENST00000489629 HOXA7P31268 230 aaPredicted RBP3.67□□□□□ -1.82
CPSF3-205ENST00000489629 CPA2P48052 419 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 JAK3P52333 1124 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 B4GALNT1Q00973 533 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 AASDHQ4L235 1098 aaPredicted RBP3.67□□□□□ -1.82
CPSF3-205ENST00000489629 MMP21Q8N119 569 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 SDR16C5Q8N3Y7 309 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 ADAMTS15Q8TE58 950 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 IPCEF1Q8WWN9 437 aaPredicted RBP3.67□□□□□ -1.82
CPSF3-205ENST00000489629 TRMT61AQ96FX7 289 aaKnown RBP3.67□□□□□ -1.82
CPSF3-205ENST00000489629 LYZL4Q96KX0 146 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 FCRL5Q96RD9 977 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 STRBPQ96SI9 672 aaKnown RBP3.67□□□□□ -1.82
CPSF3-205ENST00000489629 CINPQ9BW66 212 aaPredicted RBP3.67□□□□□ -1.82
CPSF3-205ENST00000489629 BTBD1Q9H0C5 482 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 SQORQ9Y6N5 450 aa3.67□□□□□ -1.82
CPSF3-205ENST00000489629 A0A087WZ62 844 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 FAM90A8PA6NJQ4 464 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 B4DGG1 531 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 TLX3O43711 291 aaPredicted RBP3.66□□□□□ -1.82
CPSF3-205ENST00000489629 CRYABP02511 175 aaKnown RBP3.66□□□□□ -1.82
CPSF3-205ENST00000489629 ANXA2P07355 339 aaKnown RBP3.66□□□□□ -1.82
CPSF3-205ENST00000489629 CD63P08962 238 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 FAM90A13PP0C7W8 464 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 FAM90A24PP0C7X0 464 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 CBSLP0DN79 551 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 IDUAP35475 653 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 CBSP35520 551 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 HTR6P50406 440 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 WDR5P61964 334 aaKnown RBP3.66□□□□□ -1.82
CPSF3-205ENST00000489629 RAE1P78406 368 aaKnown RBP3.66□□□□□ -1.82
CPSF3-205ENST00000489629 KCNJ12Q14500 433 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 COLCA1Q6ZS62 124 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 KRT28Q7Z3Y7 464 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 PELI3Q8N2H9 469 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 FSTL5Q8N475 847 aaPredicted RBP3.66□□□□□ -1.82
CPSF3-205ENST00000489629 WDR24Q96S15 920 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 BRIP1Q9BX63 1249 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 FAM234AQ9H0X4 552 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 SEMA4BQ9NPR2 832 aaPredicted RBP3.66□□□□□ -1.82
CPSF3-205ENST00000489629 TBC1D23Q9NUY8 699 aa3.66□□□□□ -1.82
CPSF3-205ENST00000489629 SLC22A23A1A5C7 686 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 VSTM5A8MXK1 200 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 ZNF814B7Z6K7 855 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 SMAD6O43541 496 aaKnown RBP3.65□□□□□ -1.83
CPSF3-205ENST00000489629 S100BP04271 92 aaPredicted RBP3.65□□□□□ -1.83
CPSF3-205ENST00000489629 ARP10275 920 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 RHCEP18577 417 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 RPS6KB1P23443 525 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 PBX1P40424 430 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 DGKQP52824 942 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 RHDQ02161 417 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 GAB1Q13480 694 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 ERV3-1Q14264 604 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 FAM57BQ71RH2 274 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 P3H2Q8IVL5 708 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 MYO1HQ8N1T3 1032 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 JDP2Q8WYK2 163 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 PHKBQ93100 1093 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 SCNM1Q9BWG6 230 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 UNKQ9C0B0 810 aaKnown RBP3.65□□□□□ -1.83
CPSF3-205ENST00000489629 SLC25A32Q9H2D1 315 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 TMEM8AQ9HCN3 771 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 RXFP3Q9NSD7 469 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 ABHD10Q9NUJ1 306 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 ARL8BQ9NVJ2 186 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 TMEM45AQ9NWC5 275 aa3.65□□□□□ -1.83
CPSF3-205ENST00000489629 SIRT4Q9Y6E7 314 aaPredicted RBP3.65□□□□□ -1.83
CPSF3-205ENST00000489629 FRMPD2Q68DX3 1309 aaPredicted RBP3.65□□□□□ -1.83
CPSF3-205ENST00000489629 IGLV5-39A0A0G2JS06 123 aa3.64□□□□□ -1.83
CPSF3-205ENST00000489629 PRYO14603 147 aa3.64□□□□□ -1.83
CPSF3-205ENST00000489629 KCNQ3O43525 872 aa3.64□□□□□ -1.83
CPSF3-205ENST00000489629 EPN2O95208 641 aa3.64□□□□□ -1.83
CPSF3-205ENST00000489629 DUSP1P28562 367 aa3.64□□□□□ -1.83
CPSF3-205ENST00000489629 ATICP31939 592 aa3.64□□□□□ -1.83
CPSF3-205ENST00000489629 ABLIM2Q6H8Q1 611 aa3.64□□□□□ -1.83
CPSF3-205ENST00000489629 RBM44Q6ZP01 1051 aaKnown RBP3.64□□□□□ -1.83
CPSF3-205ENST00000489629 RNF44Q7L0R7 432 aa3.64□□□□□ -1.83
CPSF3-205ENST00000489629 KRT78Q8N1N4 520 aa3.64□□□□□ -1.83
CPSF3-205ENST00000489629 MSI2Q96DH6 328 aaKnown RBP3.64□□□□□ -1.83
CPSF3-205ENST00000489629 RNF26Q9BY78 433 aaPredicted RBP3.64□□□□□ -1.83
CPSF3-205ENST00000489629 OBP2AQ9NY56 170 aa3.64□□□□□ -1.83
CPSF3-205ENST00000489629 PCDHGB6Q9Y5F9 930 aa3.64□□□□□ -1.83
CPSF3-205ENST00000489629 TRBV5-3A0A0A0MS03 114 aa3.63□□□□□ -1.83
CPSF3-205ENST00000489629 A0A0G2JK05 382 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms