RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 KLHL5Q96PQ7 755 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 EMILIN2Q9BXX0 1053 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 ANKZF1Q9H8Y5 726 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 PCDH18Q9HCL0 1135 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 TLR9Q9NR96 1032 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 CLIC5Q9NZA1 410 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.52■■□□□ 1.22e-7■■■■□ 26.2
SMC4-221ENST00000489573 MAGED2Q9UNF1 606 aaPredicted RBP22.52■■□□□ 1.2
SMC4-221ENST00000489573 PCDHA11Q9Y5I1 949 aa22.52■■□□□ 1.2
SMC4-221ENST00000489573 VEPH1Q14D04 833 aa22.51■■□□□ 1.19
SMC4-221ENST00000489573 MSANTD2Q6P1R3 559 aa22.51■■□□□ 1.19
SMC4-221ENST00000489573 SAMD11Q96NU1 681 aa22.51■■□□□ 1.19
SMC4-221ENST00000489573 DHX35Q9H5Z1 703 aaKnown RBP22.51■■□□□ 1.19
SMC4-221ENST00000489573 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.51■■□□□ 1.19
SMC4-221ENST00000489573 INSL5Q9Y5Q6 135 aa22.51■■□□□ 1.19
SMC4-221ENST00000489573 IRAK2O43187 625 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 CHRNA3P32297 505 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 CXCR3P49682 368 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 ADCY2Q08462 1091 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 PLPP4Q5VZY2 271 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 SPRED2Q7Z698 418 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 RFX6Q8HWS3 928 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 OVCA2Q8WZ82 227 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 ZNF670Q9BS34 389 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 UBE2OQ9C0C9 1292 aaKnown RBP22.5■■□□□ 1.19
SMC4-221ENST00000489573 FBXW11Q9UKB1 542 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 GREB1Q4ZG55 1949 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 TARSL2A2RTX5 802 aaKnown RBP22.5■■□□□ 1.19
SMC4-221ENST00000489573 ZNF487B1APH4 448 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 RAD51CO43502 376 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 TGM5O43548 720 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 ZDHHC11BP0C7U3 371 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 DNAJB1P25685 340 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 L1CAMP32004 1257 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 SCAPQ12770 1279 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 TWF1Q12792 350 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 MMRN1Q13201 1228 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 ARL13BQ3SXY8 428 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 EFHC2Q5JST6 749 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 BBS12Q6ZW61 710 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 MRPL43Q8N983 215 aaKnown RBP22.5■■□□□ 1.19
SMC4-221ENST00000489573 PDZD8Q8NEN9 1154 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 CCDC26Q8TAB7 109 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 CASP10Q92851 521 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 RUNDC3BQ96NL0 473 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 SERPINB11Q96P15 392 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 TGS1Q96RS0 853 aaKnown RBP22.5■■□□□ 1.19
SMC4-221ENST00000489573 KCTD15Q96SI1 283 aaPredicted RBP22.5■■□□□ 1.19
SMC4-221ENST00000489573 LRRC19Q9H756 370 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 HOMER3Q9NSC5 361 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 OLA1Q9NTK5 396 aaKnown RBP22.5■■□□□ 1.19
SMC4-221ENST00000489573 MTPAPQ9NVV4 582 aaKnown RBP eCLIP22.5■■□□□ 1.19
SMC4-221ENST00000489573 TMEM51Q9NW97 253 aa22.5■■□□□ 1.19
SMC4-221ENST00000489573 LPXNO60711 386 aa22.49■■□□□ 1.19
SMC4-221ENST00000489573 RARGP13631 454 aa22.49■■□□□ 1.19
SMC4-221ENST00000489573 HMGA1P17096 107 aaKnown RBP22.49■■□□□ 1.19
SMC4-221ENST00000489573 ADRA1BP35368 520 aa22.49■■□□□ 1.19
SMC4-221ENST00000489573 FNTAP49354 379 aa22.49■■□□□ 1.19
SMC4-221ENST00000489573 EPHB3P54753 998 aa22.49■■□□□ 1.19
SMC4-221ENST00000489573 MRPS25P82663 173 aaKnown RBP22.49■■□□□ 1.19
SMC4-221ENST00000489573 PLD1Q13393 1074 aa22.49■■□□□ 1.19
SMC4-221ENST00000489573 EIF4EBP2Q13542 120 aaPredicted RBP22.49■■□□□ 1.19
SMC4-221ENST00000489573 PPP6R3Q5H9R7 873 aaPredicted RBP22.49■■□□□ 1.19
SMC4-221ENST00000489573 C1orf54Q8WWF1 131 aa22.49■■□□□ 1.19
SMC4-221ENST00000489573 MYRFLQ96LU7 910 aa22.49■■□□□ 1.19
SMC4-221ENST00000489573 MAK16Q9BXY0 300 aaKnown RBP22.49■■□□□ 1.19
SMC4-221ENST00000489573 DCLK3Q9C098 648 aa22.49■■□□□ 1.19
SMC4-221ENST00000489573 WDCPQ9H6R7 721 aa22.49■■□□□ 1.19
SMC4-221ENST00000489573 MTMR10Q9NXD2 777 aa22.49■■□□□ 1.19
SMC4-221ENST00000489573 SFMBT1Q9UHJ3 866 aa22.49■■□□□ 1.19
SMC4-221ENST00000489573 AMACRQ9UHK6 382 aa22.49■■□□□ 1.19
SMC4-221ENST00000489573 NUDT5Q9UKK9 219 aa22.49■■□□□ 1.19
SMC4-221ENST00000489573 R3HDM2Q9Y2K5 976 aaKnown RBP22.49■■□□□ 1.19
SMC4-221ENST00000489573 C2orf71A6NGG8 1288 aa22.48■■□□□ 1.19
SMC4-221ENST00000489573 CST8O60676 142 aa22.48■■□□□ 1.19
SMC4-221ENST00000489573 CSPG5O95196 566 aa22.48■■□□□ 1.19
SMC4-221ENST00000489573 KLRC2P26717 231 aa22.48■■□□□ 1.19
SMC4-221ENST00000489573 COILP38432 576 aaPredicted RBP22.48■■□□□ 1.19
SMC4-221ENST00000489573 TFDP2Q14188 446 aa22.48■■□□□ 1.19
SMC4-221ENST00000489573 TAF12Q16514 161 aa22.48■■□□□ 1.19
SMC4-221ENST00000489573 LILRA6Q6PI73 481 aa22.48■■□□□ 1.19
SMC4-221ENST00000489573 MAATS1Q7Z4T9 603 aa22.48■■□□□ 1.19
SMC4-221ENST00000489573 ATG4AQ8WYN0 398 aa22.48■■□□□ 1.19
SMC4-221ENST00000489573 RNF34Q969K3 372 aa22.48■■□□□ 1.19
SMC4-221ENST00000489573 FAF2Q96CS3 445 aa22.48■■□□□ 1.19
SMC4-221ENST00000489573 TRMT2BQ96GJ1 504 aaKnown RBP22.48■■□□□ 1.19
SMC4-221ENST00000489573 RNF157Q96PX1 679 aa22.48■■□□□ 1.19
SMC4-221ENST00000489573 PARD6BQ9BYG5 372 aa22.48■■□□□ 1.19
SMC4-221ENST00000489573 YBX2Q9Y2T7 364 aaKnown RBP22.48■■□□□ 1.19
SMC4-221ENST00000489573 HIDE1A8MVS5 230 aa22.47■■□□□ 1.19
SMC4-221ENST00000489573 GRM6O15303 877 aa22.47■■□□□ 1.19
SMC4-221ENST00000489573 IL4RP24394 825 aa22.47■■□□□ 1.19
SMC4-221ENST00000489573 ERVK-21P61565 698 aa22.47■■□□□ 1.19
SMC4-221ENST00000489573 DYNLT1P63172 113 aa22.47■■□□□ 1.19
SMC4-221ENST00000489573 DHX34Q14147 1143 aaKnown RBP22.47■■□□□ 1.19
SMC4-221ENST00000489573 CCNG2Q16589 344 aa22.47■■□□□ 1.19
SMC4-221ENST00000489573 ANKRD20A8PQ5CZ79 823 aa22.47■■□□□ 1.19
SMC4-221ENST00000489573 BRMS1LQ5PSV4 323 aa22.47■■□□□ 1.19
SMC4-221ENST00000489573 TTC27Q6P3X3 843 aa22.47■■□□□ 1.19
SMC4-221ENST00000489573 CCDC137Q6PK04 289 aaKnown RBP22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms