RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 PRF1P14222 555 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 VPS41P49754 854 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 ID2Q02363 134 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 IFIT5Q13325 482 aaKnown RBP5.6□□□□□ -1.51
PTPN4-212ENST00000488896 P3H1Q32P28 736 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 ZNF260Q3ZCT1 412 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 TMEM196Q5HYL7 178 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 RAP1GAP2Q684P5 730 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 ANO7Q6IWH7 933 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 BEND5Q7L4P6 421 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 CCDC28AQ8IWP9 274 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 TXLNBQ8N3L3 684 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.6□□□□□ -1.51
PTPN4-212ENST00000488896 RNF152Q8N8N0 203 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 C16orf52Q8NHV5 167 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 SCNM1Q9BWG6 230 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 PCDHAC1Q9H158 963 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 MYO1AQ9UBC5 1043 aa5.6□□□□□ -1.51
PTPN4-212ENST00000488896 ZMYND8Q9ULU4 1186 aaPredicted RBP5.6□□□□□ -1.51
PTPN4-212ENST00000488896 CLCA1A8K7I4 914 aa5.59□□□□□ -1.51
PTPN4-212ENST00000488896 SOCS2O14508 198 aa5.59□□□□□ -1.51
PTPN4-212ENST00000488896 RRHO14718 337 aa5.59□□□□□ -1.51
PTPN4-212ENST00000488896 CPA2P48052 419 aa5.59□□□□□ -1.51
PTPN4-212ENST00000488896 CCT4P50991 539 aaKnown RBP5.59□□□□□ -1.51
PTPN4-212ENST00000488896 DGKQP52824 942 aa5.59□□□□□ -1.51
PTPN4-212ENST00000488896 STIM1Q13586 685 aa5.59□□□□□ -1.51
PTPN4-212ENST00000488896 TRIM71Q2Q1W2 868 aaKnown RBP5.59□□□□□ -1.51
PTPN4-212ENST00000488896 SLC9C1Q4G0N8 1177 aa5.59□□□□□ -1.51
PTPN4-212ENST00000488896 ARHGAP15Q53QZ3 475 aa5.59□□□□□ -1.51
PTPN4-212ENST00000488896 KSR2Q6VAB6 950 aa5.59□□□□□ -1.51
PTPN4-212ENST00000488896 MRPL10Q7Z7H8 261 aaKnown RBP5.59□□□□□ -1.51
PTPN4-212ENST00000488896 PIGOQ8TEQ8 1089 aa5.59□□□□□ -1.51
PTPN4-212ENST00000488896 GRAMD1AQ96CP6 724 aa5.59□□□□□ -1.51
PTPN4-212ENST00000488896 COQ8BQ96D53 544 aa5.59□□□□□ -1.51
PTPN4-212ENST00000488896 TM2D2Q9BX73 214 aa5.59□□□□□ -1.51
PTPN4-212ENST00000488896 MAN2B2Q9Y2E5 1009 aa5.59□□□□□ -1.51
PTPN4-212ENST00000488896 INPPL1O15357 1258 aa5.58□□□□□ -1.52
PTPN4-212ENST00000488896 NCK2O43639 380 aa5.58□□□□□ -1.52
PTPN4-212ENST00000488896 HARSP12081 509 aaKnown RBP5.58□□□□□ -1.52
PTPN4-212ENST00000488896 MST1P26927 711 aa5.58□□□□□ -1.52
PTPN4-212ENST00000488896 CFHR1Q03591 330 aa5.58□□□□□ -1.52
PTPN4-212ENST00000488896 PMS2P11Q13670 270 aa5.58□□□□□ -1.52
PTPN4-212ENST00000488896 CNGA3Q16281 694 aa5.58□□□□□ -1.52
PTPN4-212ENST00000488896 FAM110CQ1W6H9 321 aa5.58□□□□□ -1.52
PTPN4-212ENST00000488896 ARL13BQ3SXY8 428 aa5.58□□□□□ -1.52
PTPN4-212ENST00000488896 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.58□□□□□ -1.52
PTPN4-212ENST00000488896 C10orf25Q5T742 122 aa5.58□□□□□ -1.52
PTPN4-212ENST00000488896 MRNIPQ6NTE8 343 aa5.58□□□□□ -1.52
PTPN4-212ENST00000488896 TECPR1Q7Z6L1 1165 aa5.58□□□□□ -1.52
PTPN4-212ENST00000488896 ANKRD13BQ86YJ7 626 aa5.58□□□□□ -1.52
PTPN4-212ENST00000488896 C8orf48Q96LL4 319 aa5.58□□□□□ -1.52
PTPN4-212ENST00000488896 TMEM79Q9BSE2 394 aa5.58□□□□□ -1.52
PTPN4-212ENST00000488896 NAA15Q9BXJ9 866 aaKnown RBP5.58□□□□□ -1.52
PTPN4-212ENST00000488896 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.58□□□□□ -1.52
PTPN4-212ENST00000488896 FOXP1Q9H334 677 aaPredicted RBP5.58□□□□□ -1.52
PTPN4-212ENST00000488896 ABHD10Q9NUJ1 306 aa5.58□□□□□ -1.52
PTPN4-212ENST00000488896 A0A1W2PPC4 97 aa5.57□□□□□ -1.52
PTPN4-212ENST00000488896 C16orf96A6NNT2 1141 aa5.57□□□□□ -1.52
PTPN4-212ENST00000488896 SLC3A2P08195 630 aaKnown RBP5.57□□□□□ -1.52
PTPN4-212ENST00000488896 ALADP13716 330 aa5.57□□□□□ -1.52
PTPN4-212ENST00000488896 IDEP14735 1019 aa5.57□□□□□ -1.52
PTPN4-212ENST00000488896 PECAM1P16284 738 aaPredicted RBP5.57□□□□□ -1.52
PTPN4-212ENST00000488896 RPS13P62277 151 aaKnown RBP5.57□□□□□ -1.52
PTPN4-212ENST00000488896 SEMA3BQ13214 749 aa5.57□□□□□ -1.52
PTPN4-212ENST00000488896 MTA1Q13330 715 aa5.57□□□□□ -1.52
PTPN4-212ENST00000488896 KCNJ12Q14500 433 aa5.57□□□□□ -1.52
PTPN4-212ENST00000488896 AWAT2Q6E213 333 aa5.57□□□□□ -1.52
PTPN4-212ENST00000488896 HIBCHQ6NVY1 386 aaPredicted RBP5.57□□□□□ -1.52
PTPN4-212ENST00000488896 KIAA0408Q6ZU52 694 aa5.57□□□□□ -1.52
PTPN4-212ENST00000488896 IRF2BP2Q7Z5L9 587 aa5.57□□□□□ -1.52
PTPN4-212ENST00000488896 TFAP2DQ7Z6R9 452 aa5.57□□□□□ -1.52
PTPN4-212ENST00000488896 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.57□□□□□ -1.52
PTPN4-212ENST00000488896 PARD3BQ8TEW8 1205 aa5.57□□□□□ -1.52
PTPN4-212ENST00000488896 PIGKQ92643 395 aa5.57□□□□□ -1.52
PTPN4-212ENST00000488896 TRMT61AQ96FX7 289 aaKnown RBP5.57□□□□□ -1.52
PTPN4-212ENST00000488896 SNX27Q96L92 541 aa5.57□□□□□ -1.52
PTPN4-212ENST00000488896 WDR24Q96S15 920 aa5.57□□□□□ -1.52
PTPN4-212ENST00000488896 EIF3CQ99613 913 aaKnown RBP5.57□□□□□ -1.52
PTPN4-212ENST00000488896 ASNSD1Q9NWL6 643 aa5.57□□□□□ -1.52
PTPN4-212ENST00000488896 SIRT4Q9Y6E7 314 aaPredicted RBP5.57□□□□□ -1.52
PTPN4-212ENST00000488896 KIF3BO15066 747 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 TLR2O60603 784 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 CBFA2T3O75081 653 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 PLAUP00749 431 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 SRGAP2BP0DMP2 458 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 CTSAP10619 480 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 TRIM27P14373 513 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 TNFSF4P23510 183 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 GABRB3P28472 473 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 IGHMBP2P38935 993 aaKnown RBP5.56□□□□□ -1.52
PTPN4-212ENST00000488896 GSTM5P46439 218 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 GAB1Q13480 694 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 ELF2Q15723 593 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 LONRF1Q17RB8 773 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 FAM209BQ5JX69 171 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 ZNF793Q6ZN11 406 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 KRT73Q86Y46 540 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 PJA1Q8NG27 643 aa5.56□□□□□ -1.52
PTPN4-212ENST00000488896 AKAP1Q92667 903 aaKnown RBP eCLIP5.56□□□□□ -1.52
PTPN4-212ENST00000488896 FCRL5Q96RD9 977 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms