RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	TMEM196	Q5HYL7	178 aa		9.27	□□□□□ -0.93
USP4-213	ENST00000488520	C9orf57	Q5W0N0	161 aa		9.27	□□□□□ -0.93
USP4-213	ENST00000488520	UNQ6494/PRO21346	Q6UXR6	183 aa		9.27	□□□□□ -0.93
USP4-213	ENST00000488520	ZC3H3	Q8IXZ2	948 aa	Known RBP	9.27	□□□□□ -0.93
USP4-213	ENST00000488520	CMTM8	Q8IZV2	173 aa		9.27	□□□□□ -0.93
USP4-213	ENST00000488520	THEM5	Q8N1Q8	247 aa		9.27	□□□□□ -0.93
USP4-213	ENST00000488520	RPLP0P6	Q8NHW5	317 aa		9.27	□□□□□ -0.93
USP4-213	ENST00000488520	HPDL	Q96IR7	371 aa		9.27	□□□□□ -0.93
USP4-213	ENST00000488520	ZC3H10	Q96K80	434 aa	Known RBP	9.27	□□□□□ -0.93
USP4-213	ENST00000488520	MMS19	Q96T76	1030 aa		9.27	□□□□□ -0.93
USP4-213	ENST00000488520	FAM83C	Q9BQN1	747 aa		9.27	□□□□□ -0.93
USP4-213	ENST00000488520	MTMR12	Q9C0I1	747 aa		9.27	□□□□□ -0.93
USP4-213	ENST00000488520	CBX8	Q9HC52	389 aa		9.27	□□□□□ -0.93
USP4-213	ENST00000488520	VPS45	Q9NRW7	570 aa		9.27	□□□□□ -0.93
USP4-213	ENST00000488520	ABI2	Q9NYB9	513 aa	Predicted RBP	9.27	□□□□□ -0.93
USP4-213	ENST00000488520	ZDHHC3	Q9NYG2	299 aa		9.27	□□□□□ -0.93
USP4-213	ENST00000488520	MAGED2	Q9UNF1	606 aa	Predicted RBP	9.27	□□□□□ -0.93
USP4-213	ENST00000488520	CCDC163	A0A0D9SF12	145 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	TRDMT1	O14717	391 aa	Known RBP	9.26	□□□□□ -0.93
USP4-213	ENST00000488520	P4HA2	O15460	535 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	HUS1	O60921	280 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	C4BPA	P04003	597 aa	Known RBP	9.26	□□□□□ -0.93
USP4-213	ENST00000488520	TRIM49	P0CI25	452 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	TRIM49C	P0CI26	452 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	POLR2B	P30876	1174 aa	Known RBP	9.26	□□□□□ -0.93
USP4-213	ENST00000488520	AVPR1A	P37288	418 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	PIK3CA	P42336	1068 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	TUFM	P49411	452 aa	Known RBP	9.26	□□□□□ -0.93
USP4-213	ENST00000488520	GPR15	P49685	360 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	MXI1	P50539	228 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	DGKE	P52429	567 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	MARS	P56192	900 aa	Known RBP	9.26	□□□□□ -0.93
USP4-213	ENST00000488520	DLG4	P78352	724 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	ZNF252P-AS1	Q0IIN9	211 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	UBAP2L	Q14157	1087 aa	Known RBP	9.26	□□□□□ -0.93
USP4-213	ENST00000488520	ELF2	Q15723	593 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	MAN2A1	Q16706	1144 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	VWA3B	Q502W6	1294 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	SDHAF4	Q5VUM1	108 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	TXNDC8	Q6A555	127 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	CC2D1A	Q6P1N0	951 aa	Predicted RBP	9.26	□□□□□ -0.93
USP4-213	ENST00000488520	LRRTM3	Q86VH5	581 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	LRRC52	Q8N7C0	313 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	FBXL13	Q8NEE6	735 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	OR5B17	Q8NGF7	314 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	RIN3	Q8TB24	985 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	WHAMM	Q8TF30	809 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	TAF4B	Q92750	862 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	USP13	Q92995	863 aa	Predicted RBP	9.26	□□□□□ -0.93
USP4-213	ENST00000488520	FUCA2	Q9BTY2	467 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	ZCWPW1	Q9H0M4	648 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	VPS16	Q9H269	839 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	TDP1	Q9NUW8	608 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	RAB20	Q9NX57	234 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	DSE	Q9UL01	958 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	PCDHGA5	Q9Y5G8	931 aa		9.26	□□□□□ -0.93
USP4-213	ENST00000488520	FASN	P49327	2511 aa	Known RBP	9.26	□□□□□ -0.93
USP4-213	ENST00000488520	TMEM131	Q92545	1883 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	LNP1	A1A4G5	178 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	KPNA7	A9QM74	516 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	PATE3	B3GLJ2	98 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	PIR	O00625	290 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	CYB561D2	O14569	222 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	RHOBTB1	O94844	696 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	CST3	P01034	146 aa	Predicted RBP	9.25	□□□□□ -0.93
USP4-213	ENST00000488520	HAPLN1	P10915	354 aa	Predicted RBP	9.25	□□□□□ -0.93
USP4-213	ENST00000488520	WEE1	P30291	646 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	FMO5	P49326	533 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	MYL7	Q01449	175 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	DMC1	Q14565	340 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	UAP1L1	Q3KQV9	507 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	WDR72	Q3MJ13	1102 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	ZNF667	Q5HYK9	610 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	SH3PXD2A	Q5TCZ1	1133 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	DAB2IP	Q5VWQ8	1189 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	GBP6	Q6ZN66	633 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	TMEM150A	Q86TG1	271 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	LUZP1	Q86V48	1076 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	TTC30A	Q86WT1	665 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	TRIM59	Q8IWR1	403 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	DHX40	Q8IX18	779 aa	Known RBP	9.25	□□□□□ -0.93
USP4-213	ENST00000488520	EFCAB13	Q8IY85	973 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	CAMKK1	Q8N5S9	505 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	C1orf127	Q8N9H9	656 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	RNF214	Q8ND24	703 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	FAM81B	Q96LP2	452 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	P2RY13	Q9BPV8	354 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	TPSD1	Q9BZJ3	242 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	NDST4	Q9H3R1	872 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	PKD1L2	Q7Z442	2459 aa		9.25	□□□□□ -0.93
USP4-213	ENST00000488520	ANO9	A1A5B4	782 aa		9.24	□□□□□ -0.93
USP4-213	ENST00000488520	BCLAF3	A2AJT9	711 aa	Known RBP	9.24	□□□□□ -0.93
USP4-213	ENST00000488520	ANTXRL	A6NF34	631 aa		9.24	□□□□□ -0.93
USP4-213	ENST00000488520	KHNYN	O15037	678 aa	Known RBP	9.24	□□□□□ -0.93
USP4-213	ENST00000488520	CBFA2T2	O43439	604 aa		9.24	□□□□□ -0.93
USP4-213	ENST00000488520	APBB3	O95704	486 aa		9.24	□□□□□ -0.93
USP4-213	ENST00000488520	HLA-DRA	P01903	254 aa		9.24	□□□□□ -0.93
USP4-213	ENST00000488520	CYP11A1	P05108	521 aa		9.24	□□□□□ -0.93
USP4-213	ENST00000488520	HMGA1	P17096	107 aa	Known RBP	9.24	□□□□□ -0.93
USP4-213	ENST00000488520	DRD1	P21728	446 aa		9.24	□□□□□ -0.93

Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms