RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 DESI2Q9BSY9 194 aa17.87■□□□□ 0.45
VIM-205ENST00000485947 TBC1D14Q9P2M4 693 aa17.87■□□□□ 0.45
VIM-205ENST00000485947 GREB1Q4ZG55 1949 aa17.87■□□□□ 0.45
VIM-205ENST00000485947 KMT2BQ9UMN6 2715 aaPredicted RBP17.87■□□□□ 0.45
VIM-205ENST00000485947 A0A087X0T9 212 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 LEFTY2O00292 366 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 DDX3XO00571 662 aaKnown RBP eCLIP17.86■□□□□ 0.458e-32■■■□□ 14.7
VIM-205ENST00000485947 MED7O43513 233 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 ZNF500O60304 480 aaPredicted RBP17.86■□□□□ 0.45
VIM-205ENST00000485947 FAM228BP0C875 321 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 CNR2P34972 360 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 GFPT1Q06210 699 aaPredicted RBP17.86■□□□□ 0.45
VIM-205ENST00000485947 PON2Q15165 354 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 PPP1R2P3Q6NXS1 205 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 TRIM72Q6ZMU5 477 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 ZNF662Q6ZS27 426 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 ZNF276Q8N554 614 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 OLIG1Q8TAK6 271 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 WHAMMQ8TF30 809 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 TMEM176AQ96HP8 235 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 SMOQ99835 787 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 UBXN6Q9BZV1 441 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 NAGPAQ9UK23 515 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 KIAA1257Q9ULG3 409 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 NENFQ9UMX5 172 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 R4GN57 208 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 COL4A3Q01955 1670 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 PATJQ8NI35 1801 aa17.86■□□□□ 0.45
VIM-205ENST00000485947 E2F8A0AVK6 867 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 THAP12O43422 761 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 GZMAP12544 262 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 TDGF1P13385 188 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 CCDC130P13994 396 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 GJA4P35212 333 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 PSEN1P49768 467 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 VAV2P52735 878 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 RAD23BP54727 409 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 FMO1Q01740 532 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 TRIM68Q6AZZ1 485 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 ALKBH5Q6P6C2 394 aaKnown RBP17.85■□□□□ 0.45
VIM-205ENST00000485947 C12orf29Q8N999 325 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 SLC4A11Q8NBS3 891 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 ZMIZ2Q8NF64 920 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 RIN3Q8TB24 985 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 SLC20A1Q8WUM9 679 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 P2RY13Q9BPV8 354 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 RNF38Q9H0F5 515 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 EPC1Q9H2F5 836 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 TLR8Q9NR97 1041 aaKnown RBP17.85■□□□□ 0.45
VIM-205ENST00000485947 HMGXB4Q9UGU5 601 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 INTUQ9ULD6 942 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 SCML2Q9UQR0 700 aa17.85■□□□□ 0.45
VIM-205ENST00000485947 REXO2Q9Y3B8 237 aaKnown RBP17.85■□□□□ 0.45
VIM-205ENST00000485947 CEP250Q9BV73 2442 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 CACNA1GO43497 2377 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 FANCMQ8IYD8 2048 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 CCDC163A0A0D9SF12 145 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 MED19A0JLT2 244 aaPredicted RBP17.84■□□□□ 0.45
VIM-205ENST00000485947 OTOL1A6NHN0 477 aaPredicted RBP17.84■□□□□ 0.45
VIM-205ENST00000485947 CHURC1-FNTBB4DL54 471 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 ABL1P00519 1130 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 MMEP08473 750 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 VDRP11473 427 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 ARSAP15289 507 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 CHRNB2P17787 502 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 EIF2DP41214 584 aaKnown RBP17.84■□□□□ 0.45
VIM-205ENST00000485947 MAGEA1P43355 309 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 MAP3K7CLP57077 242 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 STILQ15468 1287 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 ZNF394Q53GI3 561 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 CCDC122Q5T0U0 273 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 KLHDC10Q6PID8 442 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 CLEC20AQ6ZU45 233 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 KIAA1328Q86T90 577 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 REXO1L1PQ8IX06 675 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 SCAMP5Q8TAC9 235 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 TTC8Q8TAM2 541 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 ZNF606Q8WXB4 792 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 RUBCNQ92622 972 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 PPP1R13BQ96KQ4 1090 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 DUSP16Q9BY84 665 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 TSGA10Q9BZW7 698 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 FAM49BQ9NUQ9 324 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 SEPT11Q9NVA2 429 aaKnown RBP17.84■□□□□ 0.45
VIM-205ENST00000485947 PCDHGC3Q9UN70 934 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 PCDHA13Q9Y5I0 950 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 CPQQ9Y646 472 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 ZNF638Q14966 1978 aaKnown RBP17.84■□□□□ 0.45
VIM-205ENST00000485947 ANAPC1Q9H1A4 1944 aa17.84■□□□□ 0.45
VIM-205ENST00000485947 MBL2P11226 248 aaPredicted RBP17.83■□□□□ 0.44
VIM-205ENST00000485947 SLC8A3P57103 927 aa17.83■□□□□ 0.44
VIM-205ENST00000485947 GAS6Q14393 721 aa17.83■□□□□ 0.44
VIM-205ENST00000485947 TAF3Q5VWG9 929 aa17.83■□□□□ 0.44
VIM-205ENST00000485947 ARHGAP17Q68EM7 881 aa17.83■□□□□ 0.44
VIM-205ENST00000485947 FSTL4Q6MZW2 842 aa17.83■□□□□ 0.44
VIM-205ENST00000485947 TADA2BQ86TJ2 420 aa17.83■□□□□ 0.44
VIM-205ENST00000485947 ADGRG2Q8IZP9 1017 aa17.83■□□□□ 0.44
VIM-205ENST00000485947 GPR161Q8N6U8 529 aaKnown RBP17.83■□□□□ 0.44
VIM-205ENST00000485947 SUMF1Q8NBK3 374 aa17.83■□□□□ 0.44
VIM-205ENST00000485947 CD101Q93033 1021 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms