RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 IFI35P80217 286 aaPredicted RBP4.59□□□□□ -1.67
VPS13D-207ENST00000476169 HSD11B2P80365 405 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 RNASELQ05823 741 aaKnown RBP4.59□□□□□ -1.67
VPS13D-207ENST00000476169 PPP2R5CQ13362 524 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 DCTN2Q13561 401 aaKnown RBP4.59□□□□□ -1.67
VPS13D-207ENST00000476169 ZNF750Q32MQ0 723 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 GALNTL6Q49A17 601 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 LRCH2Q5VUJ6 765 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 NUGGCQ68CJ6 796 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 NAIF1Q69YI7 327 aaPredicted RBP4.59□□□□□ -1.67
VPS13D-207ENST00000476169 GPR139Q6DWJ6 353 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 TMEM108Q6UXF1 575 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 H1FNTQ75WM6 255 aaPredicted RBP4.59□□□□□ -1.67
VPS13D-207ENST00000476169 SZRD1Q7Z422 152 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 DNAJB7Q7Z6W7 309 aaPredicted RBP4.59□□□□□ -1.67
VPS13D-207ENST00000476169 CIR1Q86X95 450 aaPredicted RBP4.59□□□□□ -1.67
VPS13D-207ENST00000476169 SPARTQ8N0X7 666 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 NDUFAF2Q8N183 169 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 TTC39CQ8N584 583 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 RSPH1Q8WYR4 309 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 PPP2R3CQ969Q6 453 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 FAM120BQ96EK7 910 aaKnown RBP4.59□□□□□ -1.67
VPS13D-207ENST00000476169 JAKMIP1Q96N16 626 aaKnown RBP4.59□□□□□ -1.67
VPS13D-207ENST00000476169 MNTQ99583 582 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 GPR87Q9BY21 358 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 ITPAQ9BY32 194 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 RMI1Q9H9A7 625 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 CCDC177Q9NQR7 707 aaPredicted RBP4.59□□□□□ -1.67
VPS13D-207ENST00000476169 RNF181Q9P0P0 153 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 CTTNBP2NLQ9P2B4 639 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 DNMT3BQ9UBC3 853 aaKnown RBP4.59□□□□□ -1.67
VPS13D-207ENST00000476169 EIF2B4Q9UI10 523 aaKnown RBP4.59□□□□□ -1.67
VPS13D-207ENST00000476169 CNOT7Q9UIV1 285 aaKnown RBP4.59□□□□□ -1.67
VPS13D-207ENST00000476169 NEU2Q9Y3R4 380 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 PIAS3Q9Y6X2 628 aa4.59□□□□□ -1.67
VPS13D-207ENST00000476169 ADAMTS20P59510 1910 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 KIF28PB7ZC32 967 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 E7ENX8 843 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 TNPO2O14787 897 aaKnown RBP4.58□□□□□ -1.68
VPS13D-207ENST00000476169 VILLO15195 856 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 PAX4O43316 350 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 BEST1O76090 585 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 SUN1O94901 812 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 F9P00740 461 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 CLEC3BP05452 202 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 KCNA3P22001 575 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 NFKBIAP25963 317 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 ANXA11P50995 505 aaKnown RBP4.58□□□□□ -1.68
VPS13D-207ENST00000476169 RARSP54136 660 aaKnown RBP4.58□□□□□ -1.68
VPS13D-207ENST00000476169 RPS3AP61247 264 aaKnown RBP4.58□□□□□ -1.68
VPS13D-207ENST00000476169 MC2RQ01718 297 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 TAP2Q03519 686 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 SF3A3Q12874 501 aaKnown RBP eCLIP4.58□□□□□ -1.68
VPS13D-207ENST00000476169 MYO1EQ12965 1108 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 ACVR2BQ13705 512 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 ATP1A4Q13733 1029 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 DCTN1Q14203 1278 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 ASIC2Q16515 512 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 PREPLQ4J6C6 727 aaPredicted RBP4.58□□□□□ -1.68
VPS13D-207ENST00000476169 KIAA1614Q5VZ46 1190 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 ANO7Q6IWH7 933 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 Q6ZRM9 215 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 KRT74Q7RTS7 529 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 CLNKQ7Z7G1 428 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 LRRC56Q8IYG6 542 aaPredicted RBP4.58□□□□□ -1.68
VPS13D-207ENST00000476169 CNTROBQ8N137 903 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 ADSSL1Q8N142 457 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 MSANTD4Q8NCY6 345 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 ETNPPLQ8TBG4 499 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 FEZF2Q8TBJ5 459 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 DNAJB14Q8TBM8 379 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 METTL6Q8TCB7 284 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 ZNF483Q8TF39 744 aaPredicted RBP4.58□□□□□ -1.68
VPS13D-207ENST00000476169 USP6NLQ92738 828 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 JAKMIP2Q96AA8 810 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 FEM1CQ96JP0 617 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 CDHR1Q96JP9 859 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 TOX2Q96NM4 488 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 DCLRE1CQ96SD1 692 aaKnown RBP4.58□□□□□ -1.68
VPS13D-207ENST00000476169 PTDSS2Q9BVG9 487 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 CXorf36Q9H7Y0 433 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 ARGLU1Q9NWB6 273 aaPredicted RBP4.58□□□□□ -1.68
VPS13D-207ENST00000476169 TAS2R10Q9NYW0 307 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.58□□□□□ -1.68
VPS13D-207ENST00000476169 BAG5Q9UL15 447 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 CNTN6Q9UQ52 1028 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 MRPS17Q9Y2R5 130 aaKnown RBP4.58□□□□□ -1.68
VPS13D-207ENST00000476169 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.58□□□□□ -1.68
VPS13D-207ENST00000476169 PSAT1Q9Y617 370 aa4.58□□□□□ -1.68
VPS13D-207ENST00000476169 SOS1Q07889 1333 aaPredicted RBP4.57□□□□□ -1.68
VPS13D-207ENST00000476169 FAM90A18PA6NE21 464 aa4.57□□□□□ -1.68
VPS13D-207ENST00000476169 FAM90A16PA6NEW6 464 aa4.57□□□□□ -1.68
VPS13D-207ENST00000476169 FAM90A9PA6NNJ1 464 aa4.57□□□□□ -1.68
VPS13D-207ENST00000476169 FAM90A5PA8MXJ8 464 aa4.57□□□□□ -1.68
VPS13D-207ENST00000476169 DIRC3C9JPN6 131 aa4.57□□□□□ -1.68
VPS13D-207ENST00000476169 ZNF185O15231 689 aa4.57□□□□□ -1.68
VPS13D-207ENST00000476169 CYP27B1O15528 508 aa4.57□□□□□ -1.68
VPS13D-207ENST00000476169 GUCY1B2O75343 617 aa4.57□□□□□ -1.68
VPS13D-207ENST00000476169 RPP40O75818 363 aaKnown RBP4.57□□□□□ -1.68
VPS13D-207ENST00000476169 MTA2O94776 668 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms