RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 GABRG2P18507 467 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 SDHBP21912 280 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 BRD2P25440 801 aaKnown RBP17.48■□□□□ 0.39
USP40-212ENST00000473191 P2RY2P41231 377 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 RGS7P49802 495 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 BCAT1P54687 386 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 GOLGA8FQ08AF8 430 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 GOLGA8DPQ0D2H9 430 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 ELF2Q15723 593 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 MAP7D1Q3KQU3 841 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 ARMCX6Q7L4S7 300 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 TMEFF1Q8IYR6 380 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 PPM1KQ8N3J5 372 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 TTC39CQ8N584 583 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 DEFB119Q8N690 84 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 CLEC4CQ8WTT0 213 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 MED15Q96RN5 788 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 METTL14Q9HCE5 456 aaKnown RBP17.48■□□□□ 0.39
USP40-212ENST00000473191 POLMQ9NP87 494 aaPredicted RBP17.48■□□□□ 0.39
USP40-212ENST00000473191 MARCH2Q9P0N8 246 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 BCCIPQ9P287 314 aaKnown RBP eCLIP17.48■□□□□ 0.39
USP40-212ENST00000473191 STARD13Q9Y3M8 1113 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 PCDHB4Q9Y5E5 795 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 PCDHGA5Q9Y5G8 931 aa17.48■□□□□ 0.39
USP40-212ENST00000473191 TNRC6BQ9UPQ9 1833 aaKnown RBP17.47■□□□□ 0.39
USP40-212ENST00000473191 NUP205Q92621 2012 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 TM4SF5O14894 197 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 RHOBTB1O94844 696 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 CAVIN2O95810 425 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 VDRP11473 427 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 LCP1P13796 627 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 HOXB2P14652 356 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 PTGER3P43115 390 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 DGKGP49619 791 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 BST2Q10589 180 aaKnown RBP17.47■□□□□ 0.39
USP40-212ENST00000473191 STIM1Q13586 685 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 CAMK4Q16566 473 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 GEN1Q17RS7 908 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 HSF5Q4G112 596 aaPredicted RBP17.47■□□□□ 0.39
USP40-212ENST00000473191 PPM1JQ5JR12 505 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 PMF1Q6P1K2 205 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 PGBD3Q8N328 593 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 KREMEN1Q96MU8 473 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 NT5C1BQ96P26 610 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 XPO6Q96QU8 1125 aaKnown RBP17.47■□□□□ 0.39
USP40-212ENST00000473191 TMEM74BQ9NUR3 256 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 CACNA2D2Q9NY47 1150 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 WDR35Q9P2L0 1181 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 FBXO10Q9UK96 956 aa17.47■□□□□ 0.39
USP40-212ENST00000473191 ATXN2Q99700 1313 aaKnown RBP17.47■□□□□ 0.39
USP40-212ENST00000473191 MSI1O43347 362 aaKnown RBP17.46■□□□□ 0.39
USP40-212ENST00000473191 ALDH1A2O94788 518 aa17.46■□□□□ 0.39
USP40-212ENST00000473191 PENKP01210 267 aaPredicted RBP17.46■□□□□ 0.39
USP40-212ENST00000473191 KCNA4P22459 653 aa17.46■□□□□ 0.39
USP40-212ENST00000473191 NTSR1P30989 418 aa17.46■□□□□ 0.39
USP40-212ENST00000473191 DHPSP49366 369 aaPredicted RBP17.46■□□□□ 0.39
USP40-212ENST00000473191 KCNH2Q12809 1159 aa17.46■□□□□ 0.39
USP40-212ENST00000473191 STPG1Q5TH74 334 aa17.46■□□□□ 0.39
USP40-212ENST00000473191 RSRC2Q7L4I2 434 aaKnown RBP17.46■□□□□ 0.39
USP40-212ENST00000473191 FMNL3Q8IVF7 1028 aa17.46■□□□□ 0.39
USP40-212ENST00000473191 TRIM59Q8IWR1 403 aa17.46■□□□□ 0.39
USP40-212ENST00000473191 SLC35F5Q8WV83 523 aa17.46■□□□□ 0.39
USP40-212ENST00000473191 SRRTQ9BXP5 876 aaKnown RBP17.46■□□□□ 0.39
USP40-212ENST00000473191 DNAI2Q9GZS0 605 aa17.46■□□□□ 0.39
USP40-212ENST00000473191 FAM124BQ9H5Z6 455 aaPredicted RBP17.46■□□□□ 0.39
USP40-212ENST00000473191 LRRC4Q9HBW1 653 aa17.46■□□□□ 0.39
USP40-212ENST00000473191 VPS45Q9NRW7 570 aa17.46■□□□□ 0.39
USP40-212ENST00000473191 CALCOCO1Q9P1Z2 691 aa17.46■□□□□ 0.39
USP40-212ENST00000473191 LNP1A1A4G5 178 aa17.45■□□□□ 0.38
USP40-212ENST00000473191 PMM2O15305 246 aa17.45■□□□□ 0.38
USP40-212ENST00000473191 NDUFV2P19404 249 aa17.45■□□□□ 0.38
USP40-212ENST00000473191 TBXAS1P24557 533 aaPredicted RBP17.45■□□□□ 0.38
USP40-212ENST00000473191 SGSHP51688 502 aa17.45■□□□□ 0.38
USP40-212ENST00000473191 MFAP3P55082 362 aa17.45■□□□□ 0.38
USP40-212ENST00000473191 COG7P83436 770 aa17.45■□□□□ 0.38
USP40-212ENST00000473191 APBA1Q02410 837 aa17.45■□□□□ 0.38
USP40-212ENST00000473191 PAK1Q13153 545 aa17.45■□□□□ 0.38
USP40-212ENST00000473191 BSPRYQ5W0U4 402 aa17.45■□□□□ 0.38
USP40-212ENST00000473191 LCLAT1Q6UWP7 414 aa17.45■□□□□ 0.38
USP40-212ENST00000473191 TADA2BQ86TJ2 420 aa17.45■□□□□ 0.38
USP40-212ENST00000473191 CHPFQ8IZ52 775 aa17.45■□□□□ 0.38
USP40-212ENST00000473191 IPO4Q8TEX9 1081 aaKnown RBP17.45■□□□□ 0.38
USP40-212ENST00000473191 KCTD13Q8WZ19 329 aa17.45■□□□□ 0.38
USP40-212ENST00000473191 ACP6Q9NPH0 428 aa17.45■□□□□ 0.38
USP40-212ENST00000473191 FSCN3Q9NQT6 498 aa17.45■□□□□ 0.38
USP40-212ENST00000473191 HESX1Q9UBX0 185 aa17.45■□□□□ 0.38
USP40-212ENST00000473191 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.45■□□□□ 0.38
USP40-212ENST00000473191 M0QYV0 167 aa17.44■□□□□ 0.38
USP40-212ENST00000473191 TSPAN3O60637 253 aa17.44■□□□□ 0.38
USP40-212ENST00000473191 PAEPP09466 180 aa17.44■□□□□ 0.38
USP40-212ENST00000473191 ZNF132P52740 706 aa17.44■□□□□ 0.38
USP40-212ENST00000473191 LIMK1P53667 647 aa17.44■□□□□ 0.38
USP40-212ENST00000473191 SLC8A3P57103 927 aa17.44■□□□□ 0.38
USP40-212ENST00000473191 DAOAP59103 153 aa17.44■□□□□ 0.38
USP40-212ENST00000473191 YWHAEP62258 255 aaKnown RBP17.44■□□□□ 0.38
USP40-212ENST00000473191 IRX4P78413 519 aa17.44■□□□□ 0.38
USP40-212ENST00000473191 TRIP4Q15650 581 aaPredicted RBP17.44■□□□□ 0.38
USP40-212ENST00000473191 TMEM215Q68D42 235 aa17.44■□□□□ 0.38
USP40-212ENST00000473191 GJB7Q6PEY0 223 aa17.44■□□□□ 0.38
USP40-212ENST00000473191 ARHGAP18Q8N392 663 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms