RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 ABCC13Q9NSE7 274 aa10.32□□□□□ -0.76
SF3A1-207ENST00000471342 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.32□□□□□ -0.76
SF3A1-207ENST00000471342 CTTNBP2NLQ9P2B4 639 aa10.32□□□□□ -0.76
SF3A1-207ENST00000471342 STOML2Q9UJZ1 356 aa10.32□□□□□ -0.76
SF3A1-207ENST00000471342 GUCA1BQ9UMX6 200 aa10.32□□□□□ -0.76
SF3A1-207ENST00000471342 PACSIN2Q9UNF0 486 aaPredicted RBP10.32□□□□□ -0.76
SF3A1-207ENST00000471342 MAGED2Q9UNF1 606 aaPredicted RBP10.32□□□□□ -0.76
SF3A1-207ENST00000471342 SNX10Q9Y5X0 201 aa10.32□□□□□ -0.76
SF3A1-207ENST00000471342 ANAPC1Q9H1A4 1944 aa10.32□□□□□ -0.76
SF3A1-207ENST00000471342 MYO9BQ13459 2157 aa10.32□□□□□ -0.76
SF3A1-207ENST00000471342 ZNF638Q14966 1978 aaKnown RBP10.32□□□□□ -0.76
SF3A1-207ENST00000471342 TLR5O60602 858 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 STC2O76061 302 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 FTCDO95954 541 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 CD48P09326 243 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 TCF3P15923 654 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 CTNNA2P26232 953 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 PCK1P35558 622 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 IRAK1P51617 712 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 SCAPQ12770 1279 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 IFRD2Q12894 506 aaPredicted RBP10.31□□□□□ -0.76
SF3A1-207ENST00000471342 MESDQ14696 234 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 CBX2Q14781 532 aaPredicted RBP10.31□□□□□ -0.76
SF3A1-207ENST00000471342 C5orf22Q49AR2 442 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 PIK3R6Q5UE93 754 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 PAPD7Q5XG87 772 aaKnown RBP10.31□□□□□ -0.76
SF3A1-207ENST00000471342 CC2D1AQ6P1N0 951 aaPredicted RBP10.31□□□□□ -0.76
SF3A1-207ENST00000471342 C14orf80Q86SX3 495 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 SIX6OS1Q8N1H7 587 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 DEFB123Q8N688 67 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 ARL14EPQ8N8R7 260 aaPredicted RBP10.31□□□□□ -0.76
SF3A1-207ENST00000471342 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.31□□□□□ -0.76
SF3A1-207ENST00000471342 FAM172AQ8WUF8 416 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 SMG7Q92540 1137 aaKnown RBP10.31□□□□□ -0.76
SF3A1-207ENST00000471342 RAPGEF5Q92565 580 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 USP13Q92995 863 aaPredicted RBP10.31□□□□□ -0.76
SF3A1-207ENST00000471342 CHFRQ96EP1 664 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 ZNF512Q96ME7 567 aaPredicted RBP10.31□□□□□ -0.76
SF3A1-207ENST00000471342 KLC2Q9H0B6 622 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 SMG9Q9H0W8 520 aaKnown RBP10.31□□□□□ -0.76
SF3A1-207ENST00000471342 POMKQ9H5K3 350 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 TRPV4Q9HBA0 871 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 MRPL47Q9HD33 250 aaKnown RBP10.31□□□□□ -0.76
SF3A1-207ENST00000471342 DZANK1Q9NVP4 752 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 PCDHA3Q9Y5H8 950 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 SCINQ9Y6U3 715 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 OBSL1O75147 1896 aa10.31□□□□□ -0.76
SF3A1-207ENST00000471342 C2orf16Q68DN1 1984 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 SHISA7A6NL88 538 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 M0QYT0 321 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 LRG1P02750 347 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 ATP1A1P05023 1023 aaKnown RBP10.3□□□□□ -0.76
SF3A1-207ENST00000471342 RARAP10276 462 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 MYL4P12829 197 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 NCAM1P13591 858 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 HOXB8P17481 243 aaPredicted RBP10.3□□□□□ -0.76
SF3A1-207ENST00000471342 CA8P35219 290 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 CTNNA1P35221 906 aaKnown RBP10.3□□□□□ -0.76
SF3A1-207ENST00000471342 ADRA1BP35368 520 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 PPP3CCP48454 512 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 SLC8A3P57103 927 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 ETF1P62495 437 aaKnown RBP10.3□□□□□ -0.76
SF3A1-207ENST00000471342 ATP11AP98196 1134 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 NNTQ13423 1086 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 PIGHQ14442 188 aaPredicted RBP10.3□□□□□ -0.76
SF3A1-207ENST00000471342 ACAP1Q15027 740 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 SIX1Q15475 284 aaPredicted RBP10.3□□□□□ -0.76
SF3A1-207ENST00000471342 GAB4Q2WGN9 574 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 PABPC1LQ4VXU2 614 aaKnown RBP10.3□□□□□ -0.76
SF3A1-207ENST00000471342 FAM133BQ5BKY9 247 aaKnown RBP10.3□□□□□ -0.76
SF3A1-207ENST00000471342 ZC3H12AQ5D1E8 599 aaKnown RBP10.3□□□□□ -0.76
SF3A1-207ENST00000471342 LRRC38Q5VT99 294 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 KIAA1328Q86T90 577 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 ITIH5Q86UX2 942 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 PYROXD2Q8N2H3 581 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 PDZD8Q8NEN9 1154 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 FGF13Q92913 245 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 FAM149B1Q96BN6 582 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 FAF2Q96CS3 445 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 RPP25Q9BUL9 199 aaKnown RBP10.3□□□□□ -0.76
SF3A1-207ENST00000471342 SNRNP25Q9BV90 132 aaKnown RBP10.3□□□□□ -0.76
SF3A1-207ENST00000471342 PLA2G2FQ9BZM2 168 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 TASP1Q9H6P5 420 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 TLR8Q9NR97 1041 aaKnown RBP10.3□□□□□ -0.76
SF3A1-207ENST00000471342 IP6K2Q9UHH9 426 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 FZD10Q9ULW2 581 aa10.3□□□□□ -0.76
SF3A1-207ENST00000471342 SOBPA7XYQ1 873 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 ESPNB1AK53 854 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 MYO1FO00160 1098 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 SART1O43290 800 aaKnown RBP10.29□□□□□ -0.76
SF3A1-207ENST00000471342 ZSCAN12O43309 604 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 KRT86O43790 486 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 PYGMP11217 842 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 CHRM1P11229 460 aaPredicted RBP10.29□□□□□ -0.76
SF3A1-207ENST00000471342 IGFBP4P22692 258 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 PSMA2P25787 234 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 HOXC13P31276 330 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 SLC6A4P31645 630 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 L1CAMP32004 1257 aa10.29□□□□□ -0.76
SF3A1-207ENST00000471342 PSEN1P49768 467 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms