RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 TBCCQ15814 346 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 CNPY1Q3B7I2 92 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 TBC1D25Q3MII6 688 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 DNAL1Q4LDG9 190 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 LIN52Q52LA3 116 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 ZNF618Q5T7W0 954 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 AAGABQ6PD74 315 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 C15orf39Q6ZRI6 1047 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 MIER3Q7Z3K6 550 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 LRRC6Q86X45 466 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 MAP4K3Q8IVH8 894 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 TRIM42Q8IWZ5 723 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 PPIL6Q8IXY8 311 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 FAM81AQ8TBF8 368 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 FEZF2Q8TBJ5 459 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 DTX3LQ8TDB6 740 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 SP7Q8TDD2 431 aaPredicted RBP9.95□□□□□ -0.82
HDAC3-205ENST00000469550 DCAKDQ8WVC6 231 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 CCDC127Q96BQ5 260 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 ECSITQ9BQ95 431 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 SENP7Q9BQF6 1050 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 MXRA8Q9BRK3 442 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 MIS12Q9H081 205 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 C1orf21Q9H246 121 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 ARHGEF4Q9NR80 690 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 STRIP2Q9ULQ0 834 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 TBX20Q9UMR3 447 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 DOCK5Q9H7D0 1870 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 IQANK1A0A1B0GTG1 560 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 WDR91A4D1P6 747 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 CSDE1O75534 798 aaKnown RBP9.95□□□□□ -0.82
HDAC3-205ENST00000469550 CIB2O75838 187 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 MT-ND3P03897 115 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 GLRA2P23416 452 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 KCNQ1P51787 676 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 RPL26P61254 145 aaKnown RBP9.95□□□□□ -0.82
HDAC3-205ENST00000469550 NOMO3P69849 1222 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 HTRA4P83105 476 aaPredicted RBP9.95□□□□□ -0.82
HDAC3-205ENST00000469550 CYP24A1Q07973 514 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 TFDP1Q14186 410 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 LRRC23Q53EV4 343 aaPredicted RBP9.95□□□□□ -0.82
HDAC3-205ENST00000469550 KYAT3Q6YP21 454 aaKnown RBP9.95□□□□□ -0.82
HDAC3-205ENST00000469550 SPOCD1Q6ZMY3 1216 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 SH2D5Q6ZV89 423 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 NIPA1Q7RTP0 329 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 SCUBE1Q8IWY4 988 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 SLC35B2Q8TB61 432 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 APOPT1Q96IL0 206 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 FNBP1Q96RU3 617 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 FBXO6Q9NRD1 293 aaPredicted RBP9.95□□□□□ -0.82
HDAC3-205ENST00000469550 C1orf112Q9NSG2 853 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 PARVAQ9NVD7 372 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 SLC17A7Q9P2U7 560 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 PLA2G4CQ9UP65 541 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 EFR3BQ9Y2G0 817 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 WASF2Q9Y6W5 498 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 VCANP13611 3396 aa9.95□□□□□ -0.82
HDAC3-205ENST00000469550 NLRC5Q86WI3 1866 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 LINC01553A4QN01 128 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 B2RBV5 119 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 SPATA31C2B4DYI2 1134 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 SLC16A4O15374 487 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 LGALS2P05162 132 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 PABPC4LP0CB38 370 aaKnown RBP9.94□□□□□ -0.82
HDAC3-205ENST00000469550 ETS1P14921 441 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 AMPD1P23109 780 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 QARSP47897 775 aaKnown RBP9.94□□□□□ -0.82
HDAC3-205ENST00000469550 NOP14P78316 857 aaKnown RBP9.94□□□□□ -0.82
HDAC3-205ENST00000469550 CLDN10P78369 228 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 XIAPP98170 497 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 ZNF200P98182 395 aaPredicted RBP9.94□□□□□ -0.82
HDAC3-205ENST00000469550 LSAMPQ13449 338 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 SKIV2LQ15477 1246 aaKnown RBP9.94□□□□□ -0.82
HDAC3-205ENST00000469550 PABPC1LQ4VXU2 614 aaKnown RBP9.94□□□□□ -0.82
HDAC3-205ENST00000469550 XRRA1Q6P2D8 792 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 METTL7BQ6UX53 244 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 MFSD7Q6UXD7 560 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 C3orf62Q6ZUJ4 267 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 ACAD11Q709F0 780 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 SPRED2Q7Z698 418 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 PHLDB2Q86SQ0 1253 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 NAT8LQ8N9F0 302 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 HLA-CQ95604 372 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 C7orf26Q96N11 449 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 CYTH2Q99418 400 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 ZBED2Q9BTP6 218 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 C1QTNF1Q9BXJ1 281 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 ZWILCHQ9H900 591 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.94□□□□□ -0.829e-10■■■■■ 103.3
HDAC3-205ENST00000469550 NDE1Q9NXR1 346 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 DDX56Q9NY93 547 aaKnown RBP9.94□□□□□ -0.82
HDAC3-205ENST00000469550 NDUFA13Q9P0J0 144 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 ATXN10Q9UBB4 475 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 TMCO1Q9UM00 188 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 SSX2IPQ9Y2D8 614 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 INSL6Q9Y581 213 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 hCG_1818297A0A087WSY0 165 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 C17orf102A2RUQ5 167 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 TMEM191CA6NGB0 347 aa9.94□□□□□ -0.82
HDAC3-205ENST00000469550 H3BRB1 525 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms