RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 GTPBP3Q969Y2 492 aaKnown RBP5.65□□□□□ -1.5
PTPN4-209ENST00000469511 TRMT2BQ96GJ1 504 aaKnown RBP5.65□□□□□ -1.5
PTPN4-209ENST00000469511 ABHD17AQ96GS6 310 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 MRGPRX1Q96LB2 322 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 PLIN2Q99541 437 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 NTPCRQ9BSD7 190 aaKnown RBP5.65□□□□□ -1.5
PTPN4-209ENST00000469511 MMTAG2Q9BU76 263 aaKnown RBP5.65□□□□□ -1.5
PTPN4-209ENST00000469511 GPR174Q9BXC1 333 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 MIR1-1HGQ9H1L0 117 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 CLMPQ9H6B4 373 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 TMEM30AQ9NV96 361 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 TMEM63CQ9P1W3 806 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 CFAP97Q9P2B7 532 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 CPSF3Q9UKF6 684 aaKnown RBP5.65□□□□□ -1.5
PTPN4-209ENST00000469511 L1RE1Q9UN81 338 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 NME7Q9Y5B8 376 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 CPQQ9Y646 472 aa5.65□□□□□ -1.5
PTPN4-209ENST00000469511 TEP1Q99973 2627 aaKnown RBP5.65□□□□□ -1.51
PTPN4-209ENST00000469511 TBC1D3BA6NDS4 549 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 EIF1AYO14602 144 aaKnown RBP5.64□□□□□ -1.51
PTPN4-209ENST00000469511 PFKFB2O60825 505 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 CPNE3O75131 537 aaKnown RBP5.64□□□□□ -1.51
PTPN4-209ENST00000469511 CDC45O75419 566 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 OR52Z1P0C646 297 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 ADH5P11766 374 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 VAMP1P23763 118 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 LMO2P25791 158 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 PSMA5P28066 241 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 GRIA2P42262 883 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 DPP6P42658 865 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 TNFRSF4P43489 277 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 PGFP49763 221 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 TAF6P49848 677 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 CACNA2D1P54289 1103 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 CXADRP78310 365 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 IL9RQ01113 521 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 TAGLNQ01995 201 aaKnown RBP5.64□□□□□ -1.51
PTPN4-209ENST00000469511 CCDC173Q0VFZ6 552 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 ST3GAL1Q11201 340 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 DNAJC3Q13217 504 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 ORC1Q13415 861 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 KCNB1Q14721 858 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 TMEM132DQ14C87 1099 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 KIF19Q2TAC6 998 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 C10orf76Q5T2E6 689 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 DCAF12L1Q5VU92 463 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 LMBRD2Q68DH5 695 aaPredicted RBP5.64□□□□□ -1.51
PTPN4-209ENST00000469511 KIAA1324Q6UXG2 1013 aaKnown RBP5.64□□□□□ -1.51
PTPN4-209ENST00000469511 CRELD2Q6UXH1 353 aaPredicted RBP5.64□□□□□ -1.51
PTPN4-209ENST00000469511 ZPBP2Q6X784 338 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 USP49Q70CQ1 688 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 SV2AQ7L0J3 742 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 GPR155Q7Z3F1 870 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 TMEM25Q86YD3 366 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 DCP1BQ8IZD4 617 aaKnown RBP5.64□□□□□ -1.51
PTPN4-209ENST00000469511 THEM5Q8N1Q8 247 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 PDCL2Q8N4E4 241 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 C2orf15Q8WU43 125 aaKnown RBP5.64□□□□□ -1.51
PTPN4-209ENST00000469511 DNASE2BQ8WZ79 361 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 EXOC4Q96A65 974 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 TOE1Q96GM8 510 aaKnown RBP5.64□□□□□ -1.51
PTPN4-209ENST00000469511 NAF1Q96HR8 494 aaKnown RBP5.64□□□□□ -1.51
PTPN4-209ENST00000469511 TRIM4Q9C037 500 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 RPF1Q9H9Y2 349 aaKnown RBP5.64□□□□□ -1.51
PTPN4-209ENST00000469511 CPNE5Q9HCH3 593 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 PDRG1Q9NUG6 133 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 DDX43Q9NXZ2 648 aaKnown RBP5.64□□□□□ -1.51
PTPN4-209ENST00000469511 DPP3Q9NY33 737 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 WSB2Q9NYS7 404 aaPredicted RBP5.64□□□□□ -1.51
PTPN4-209ENST00000469511 LRWD1Q9UFC0 647 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 EIF2B4Q9UI10 523 aaKnown RBP5.64□□□□□ -1.51
PTPN4-209ENST00000469511 ZMYM5Q9UJ78 669 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 FOXD3Q9UJU5 478 aaPredicted RBP5.64□□□□□ -1.51
PTPN4-209ENST00000469511 SNX11Q9Y5W9 270 aa5.64□□□□□ -1.51
PTPN4-209ENST00000469511 A0A0B4J269 797 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 A0A1B0GTW7 788 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 ZNF840PA6NDX5 716 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 KPNA7A9QM74 516 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 H0Y8X5 98 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 OGTO15294 1046 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 NDUFS2O75306 463 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 MAP3K6O95382 1288 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 OLFM2O95897 454 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 OAS1P00973 400 aaKnown RBP5.63□□□□□ -1.51
PTPN4-209ENST00000469511 NCAM1P13591 858 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 PLS3P13797 630 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 NTSR1P30989 418 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 GRIK1P39086 918 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 MATKP42679 507 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 PSMC1P62191 440 aaKnown RBP5.63□□□□□ -1.51
PTPN4-209ENST00000469511 RPL10AP62906 217 aaKnown RBP5.63□□□□□ -1.51
PTPN4-209ENST00000469511 SLC7A9P82251 487 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 TLE3Q04726 772 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 STRN3Q13033 797 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 TARDBPQ13148 414 aaKnown RBP eCLIP5.63□□□□□ -1.51
PTPN4-209ENST00000469511 BYSLQ13895 437 aaKnown RBP5.63□□□□□ -1.51
PTPN4-209ENST00000469511 ME3Q16798 604 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 HSF5Q4G112 596 aaPredicted RBP5.63□□□□□ -1.51
PTPN4-209ENST00000469511 ARSHQ5FYA8 562 aa5.63□□□□□ -1.51
PTPN4-209ENST00000469511 CPLX2Q6PUV4 134 aaKnown RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms