RNA–Protein interactions for RNA: ENST00000461113.5

HDAC4-207, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 1,019 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-207ENST00000461113 GOLGA1Q92805 767 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 E2F7Q96AV8 911 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 NAA15Q9BXJ9 866 aaKnown RBP13.17□□□□□ -0.3
HDAC4-207ENST00000461113 EDEM3Q9BZQ6 932 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 NACA2Q9H009 215 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 NUCKS1Q9H1E3 243 aaKnown RBP13.17□□□□□ -0.3
HDAC4-207ENST00000461113 TASP1Q9H6P5 420 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 MYO6Q9UM54 1294 aa13.17□□□□□ -0.3
HDAC4-207ENST00000461113 LAMA1P25391 3075 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 CDX4O14627 284 aaPredicted RBP13.16□□□□□ -0.3
HDAC4-207ENST00000461113 DCLK1O15075 740 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 GFPT2O94808 682 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 RHOBTB1O94844 696 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 FERP16591 822 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 PFKLP17858 780 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 AVPR1AP37288 418 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 ACADSBP45954 432 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 PSEN1P49768 467 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 CACNA2D1P54289 1103 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 PDE4CQ08493 712 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 TEAD2Q15562 447 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 TSR1Q2NL82 804 aaKnown RBP13.16□□□□□ -0.3
HDAC4-207ENST00000461113 PIGZQ86VD9 579 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 ZNF677Q86XU0 584 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 TMC8Q8IU68 726 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 GPIHBP1Q8IV16 184 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 SHKBP1Q8TBC3 707 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 TFAP2BQ92481 460 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 HSFY1Q96LI6 401 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 BBC3Q96PG8 261 aaPredicted RBP13.16□□□□□ -0.3
HDAC4-207ENST00000461113 TTLL2Q9BWV7 592 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 TRIM5Q9C035 493 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 XPO4Q9C0E2 1151 aaKnown RBP13.16□□□□□ -0.3
HDAC4-207ENST00000461113 MIS12Q9H081 205 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 SYNCQ9H7C4 482 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 TRPC7Q9HCX4 862 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 TLR8Q9NR97 1041 aaKnown RBP13.16□□□□□ -0.3
HDAC4-207ENST00000461113 POLR3BQ9NW08 1133 aaPredicted RBP13.16□□□□□ -0.3
HDAC4-207ENST00000461113 GTSE1Q9NYZ3 720 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 TSC2P49815 1807 aa13.16□□□□□ -0.3
HDAC4-207ENST00000461113 LOC400499M0QZD8 3231 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 TRAV19A0A0A6YYK7 116 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 EIF4E1BA6NMX2 242 aaKnown RBP13.15□□□□□ -0.3
HDAC4-207ENST00000461113 SART1O43290 800 aaKnown RBP13.15□□□□□ -0.3
HDAC4-207ENST00000461113 BEST1O76090 585 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 F11P03951 625 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 RALAP11233 206 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 CYP11B1P15538 503 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 PLA2G4AP47712 749 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 ARID5AQ03989 594 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 FCHO2Q0JRZ9 810 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 TRIM14Q14142 442 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 GAREM2Q75VX8 874 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 SLC47A2Q86VL8 602 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 MON1AQ86VX9 555 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 TTC30AQ86WT1 665 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 TMEM35BQ8NCS4 154 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 ZMIZ2Q8NF64 920 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 SCAMP5Q8TAC9 235 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 KCTD13Q8WZ19 329 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 ZFYVE19Q96K21 471 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 CDK5RAP1Q96SZ6 601 aaKnown RBP13.15□□□□□ -0.3
HDAC4-207ENST00000461113 LRRC3Q9BY71 257 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 ST7Q9NRC1 585 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 PCDHGC3Q9UN70 934 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 SCML2Q9UQR0 700 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 IGSF10Q6WRI0 2623 aa13.15□□□□□ -0.3
HDAC4-207ENST00000461113 SPAARA0A1B0GVQ0 90 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 TNFRSF10BO14763 440 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 KHNYNO15037 678 aaKnown RBP13.14□□□□□ -0.31
HDAC4-207ENST00000461113 FBXO21O94952 628 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 CAPNS1P04632 268 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 CKMP06732 381 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 USP17L7P0C7H9 530 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 HDCP19113 662 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 CLCN1P35523 988 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 TKTL1P51854 596 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 KIF11P52732 1056 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 JAM2P57087 298 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 USP46P62068 366 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 CYP4F8P98187 520 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 ASIC2Q16515 512 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 FIGNQ5HY92 759 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 HECTD3Q5T447 861 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 SFMBT2Q5VUG0 894 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 DPY19L2P1Q6NXN4 242 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 TRIM72Q6ZMU5 477 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 MAB21L3Q8N8X9 362 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 IPO4Q8TEX9 1081 aaKnown RBP13.14□□□□□ -0.31
HDAC4-207ENST00000461113 STK32AQ8WU08 396 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 TRIM62Q9BVG3 475 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 LHX5Q9H2C1 402 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 IL21Q9HBE4 155 aa13.14□□□□□ -0.31
HDAC4-207ENST00000461113 CHORDC1Q9UHD1 332 aaPredicted RBP13.14□□□□□ -0.31
HDAC4-207ENST00000461113 AJAP1Q9UKB5 411 aaPredicted RBP13.14□□□□□ -0.31
HDAC4-207ENST00000461113 LUC7L2Q9Y383 392 aaKnown RBP13.14□□□□□ -0.31
HDAC4-207ENST00000461113 TICRRQ7Z2Z1 1910 aa13.13□□□□□ -0.31
HDAC4-207ENST00000461113 MAST4O15021 2626 aa13.13□□□□□ -0.31
HDAC4-207ENST00000461113 A0A1W2PQJ5 194 aa13.13□□□□□ -0.31
HDAC4-207ENST00000461113 ZNF840PA6NDX5 716 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms