RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 CUL3Q13618 768 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 ACAP1Q15027 740 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 SH3PXD2AQ5TCZ1 1133 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 TSHZ1Q6ZSZ6 1077 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 XYLT1Q86Y38 959 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 ZDHHC14Q8IZN3 488 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 CD101Q93033 1021 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 VPS39Q96JC1 886 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 TBCBQ99426 244 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 ABHD16BQ9H3Z7 469 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 WDCPQ9H6R7 721 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 MINDY3Q9H8M7 445 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 VTA1Q9NP79 307 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 RNF186Q9NXI6 227 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 HMGXB4Q9UGU5 601 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 SCOCQ9UIL1 159 aa12.02□□□□□ -0.49
NPHP4-204ENST00000460696 SCN7AQ01118 1682 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 DNAJC8O75937 253 aaPredicted RBP12.01□□□□□ -0.49
NPHP4-204ENST00000460696 ABHD2P08910 425 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 SYN1P17600 705 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 GDF10P55107 478 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 CCL23P55773 120 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 SLC1A5Q15758 541 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 C16orf46Q6P387 395 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 CPT1BQ92523 772 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 C18orf25Q96B23 403 aaPredicted RBP12.01□□□□□ -0.49
NPHP4-204ENST00000460696 SGF29Q96ES7 293 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 TMEM109Q9BVC6 243 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 TASP1Q9H6P5 420 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 KRT82Q9NSB4 513 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 WDR27A2RRH5 827 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 CASTOR2A6NHX0 329 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 JCHAINP01591 159 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 TAC1P20366 129 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 TGM2P21980 687 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 SPRP35270 261 aaPredicted RBP12.01□□□□□ -0.49
NPHP4-204ENST00000460696 YWHAZP63104 245 aaKnown RBP12.01□□□□□ -0.49
NPHP4-204ENST00000460696 OGDHQ02218 1023 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 PTP4A2Q12974 167 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 ACVR2BQ13705 512 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 HTR3CQ8WXA8 447 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 MRPL45Q9BRJ2 306 aaKnown RBP12.01□□□□□ -0.49
NPHP4-204ENST00000460696 ETNK2Q9NVF9 386 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 BCAP29Q9UHQ4 241 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.01□□□□□ -0.49
NPHP4-204ENST00000460696 TCRBV9S1A1TA0A576 114 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 PMPCBO75439 489 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 HMBSP08397 361 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 PMLP29590 882 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 ABCG1P45844 678 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 RABGAP1LQ5R372 815 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 UBAP2Q5T6F2 1119 aaKnown RBP12.01□□□□□ -0.49
NPHP4-204ENST00000460696 KIAA1841Q6NSI8 718 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 CCDC117Q8IWD4 279 aaPredicted RBP12.01□□□□□ -0.49
NPHP4-204ENST00000460696 SLC4A11Q8NBS3 891 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 GSDMBQ8TAX9 411 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 RAB3IL1Q8TBN0 382 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 NKD2Q969F2 451 aaPredicted RBP12.01□□□□□ -0.49
NPHP4-204ENST00000460696 PPWD1Q96BP3 646 aaKnown RBP12.01□□□□□ -0.49
NPHP4-204ENST00000460696 PABPC5Q96DU9 382 aaKnown RBP12.01□□□□□ -0.49
NPHP4-204ENST00000460696 MTBPQ96DY7 904 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 CELF6Q96J87 481 aaKnown RBP12.01□□□□□ -0.49
NPHP4-204ENST00000460696 TWNKQ96RR1 684 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 YIPF3Q9GZM5 350 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 CXorf56Q9H5V9 222 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 ACSS3Q9H6R3 686 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 SLC17A7Q9P2U7 560 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 ACTL7BQ9Y614 415 aa12.01□□□□□ -0.49
NPHP4-204ENST00000460696 CILPO75339 1184 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 HOXC6P09630 235 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 TPH1P17752 444 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 MGAT1P26572 445 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 MLH1P40692 756 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 RASA2Q15283 850 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 PDK4Q16654 411 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 FSCBQ5H9T9 825 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 SH2D4BQ5SQS7 431 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 FNBP1LQ5T0N5 605 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 SUGP1Q8IWZ8 645 aaKnown RBP12□□□□□ -0.49
NPHP4-204ENST00000460696 ARRDC4Q8NCT1 418 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 SPDL1Q96EA4 605 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 GOLGA2P5Q9HBQ8 144 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 DDX43Q9NXZ2 648 aaKnown RBP12□□□□□ -0.49
NPHP4-204ENST00000460696 LOC102724159A0A0B4J2E5 919 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 SETSIPP0DME0 302 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 KCNA4P22459 653 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 ATXN3P54252 364 aaPredicted RBP12□□□□□ -0.49
NPHP4-204ENST00000460696 HIC1Q14526 733 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 PWP2Q15269 919 aaKnown RBP12□□□□□ -0.49
NPHP4-204ENST00000460696 MTHFD1LQ6UB35 978 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 AGAP11Q8TF27 550 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 GTF3C2Q8WUA4 911 aaPredicted RBP12□□□□□ -0.49
NPHP4-204ENST00000460696 APOPT1Q96IL0 206 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 RMDN2Q96LZ7 410 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 HERPUD2Q9BSE4 406 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 LHX5Q9H2C1 402 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 NXF3Q9H4D5 531 aaKnown RBP12□□□□□ -0.49
NPHP4-204ENST00000460696 DDX60LQ5H9U9 1706 aaKnown RBP12□□□□□ -0.49
NPHP4-204ENST00000460696 C17orf102A2RUQ5 167 aa12□□□□□ -0.49
NPHP4-204ENST00000460696 RNF103O00237 685 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms