RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 CLPTM1LQ96KA5 538 aa8.81□□□□□ -1
VPS50-208ENST00000458707 ACAP3Q96P50 834 aa8.81□□□□□ -1
VPS50-208ENST00000458707 ZBED2Q9BTP6 218 aa8.81□□□□□ -1
VPS50-208ENST00000458707 THTPAQ9BU02 230 aa8.81□□□□□ -1
VPS50-208ENST00000458707 MECRQ9BV79 373 aa8.81□□□□□ -1
VPS50-208ENST00000458707 TMEM39BQ9GZU3 492 aa8.81□□□□□ -1
VPS50-208ENST00000458707 RETREG1Q9H6L5 497 aa8.81□□□□□ -1
VPS50-208ENST00000458707 USP29Q9HBJ7 922 aa8.81□□□□□ -1
VPS50-208ENST00000458707 S100A14Q9HCY8 104 aa8.81□□□□□ -1
VPS50-208ENST00000458707 PCMTD2Q9NV79 361 aa8.81□□□□□ -1
VPS50-208ENST00000458707 PAK5Q9P286 719 aa8.81□□□□□ -1
VPS50-208ENST00000458707 FBXO40Q9UH90 709 aa8.81□□□□□ -1
VPS50-208ENST00000458707 CYTH4Q9UIA0 394 aa8.81□□□□□ -1
VPS50-208ENST00000458707 PPM1HQ9ULR3 514 aa8.81□□□□□ -1
VPS50-208ENST00000458707 SOX13Q9UN79 622 aa8.81□□□□□ -1
VPS50-208ENST00000458707 TELO2Q9Y4R8 837 aa8.81□□□□□ -1
VPS50-208ENST00000458707 CITO14578 2027 aa8.8□□□□□ -1
VPS50-208ENST00000458707 CXorf49A8MYA2 514 aaPredicted RBP8.8□□□□□ -1
VPS50-208ENST00000458707 PRR5-ARHGAP8B1AHC4 643 aa8.8□□□□□ -1
VPS50-208ENST00000458707 TIMM44O43615 452 aa8.8□□□□□ -1
VPS50-208ENST00000458707 CCNT2O60583 730 aaKnown RBP8.8□□□□□ -1
VPS50-208ENST00000458707 KRT38O76015 456 aa8.8□□□□□ -1
VPS50-208ENST00000458707 SUPT20HL2P0C7V6 817 aa8.8□□□□□ -1
VPS50-208ENST00000458707 PABPC4LP0CB38 370 aaKnown RBP8.8□□□□□ -1
VPS50-208ENST00000458707 MIPP30301 263 aa8.8□□□□□ -1
VPS50-208ENST00000458707 ASPAP45381 313 aa8.8□□□□□ -1
VPS50-208ENST00000458707 ARHGAP8P85298 464 aa8.8□□□□□ -1
VPS50-208ENST00000458707 KDSRQ06136 332 aa8.8□□□□□ -1
VPS50-208ENST00000458707 BTKQ06187 659 aa8.8□□□□□ -1
VPS50-208ENST00000458707 TUBB3Q13509 450 aa8.8□□□□□ -1
VPS50-208ENST00000458707 GRM2Q14416 872 aa8.8□□□□□ -1
VPS50-208ENST00000458707 SUPT20HL1Q3ZLR7 823 aa8.8□□□□□ -1
VPS50-208ENST00000458707 C1orf146Q5VVC0 180 aa8.8□□□□□ -1
VPS50-208ENST00000458707 RSBN1LQ6PCB5 846 aaPredicted RBP8.8□□□□□ -1
VPS50-208ENST00000458707 ZPBP2Q6X784 338 aa8.8□□□□□ -1
VPS50-208ENST00000458707 RFX8Q6ZV50 586 aa8.8□□□□□ -1
VPS50-208ENST00000458707 DHDDSQ86SQ9 333 aa8.8□□□□□ -1
VPS50-208ENST00000458707 XYLT1Q86Y38 959 aa8.8□□□□□ -1
VPS50-208ENST00000458707 ANKRD13BQ86YJ7 626 aa8.8□□□□□ -1
VPS50-208ENST00000458707 NUDCD3Q8IVD9 361 aa8.8□□□□□ -1
VPS50-208ENST00000458707 TAB3Q8N5C8 712 aaPredicted RBP8.8□□□□□ -1
VPS50-208ENST00000458707 PPM1NQ8N819 430 aa8.8□□□□□ -1
VPS50-208ENST00000458707 TMEM143Q96AN5 459 aa8.8□□□□□ -1
VPS50-208ENST00000458707 CDHR1Q96JP9 859 aa8.8□□□□□ -1
VPS50-208ENST00000458707 OLFM3Q96PB7 478 aa8.8□□□□□ -1
VPS50-208ENST00000458707 CENPKQ9BS16 269 aa8.8□□□□□ -1
VPS50-208ENST00000458707 C20orf27Q9GZN8 174 aa8.8□□□□□ -1
VPS50-208ENST00000458707 EVPLQ92817 2033 aa8.8□□□□□ -1
VPS50-208ENST00000458707 A0A0G2JMZ2 1700 aa8.8□□□□□ -1
VPS50-208ENST00000458707 LRRC37A2A6NM11 1700 aa8.8□□□□□ -1
VPS50-208ENST00000458707 HMX2A2RU54 273 aa8.79□□□□□ -1
VPS50-208ENST00000458707 TMEM221A6NGB7 291 aa8.79□□□□□ -1
VPS50-208ENST00000458707 LRRIQ4A6NIV6 560 aa8.79□□□□□ -1
VPS50-208ENST00000458707 FAM159BA6NKW6 160 aa8.79□□□□□ -1
VPS50-208ENST00000458707 MED7O43513 233 aa8.79□□□□□ -1
VPS50-208ENST00000458707 RNASEH1O60930 286 aaKnown RBP8.79□□□□□ -1
VPS50-208ENST00000458707 AVILO75366 819 aa8.79□□□□□ -1
VPS50-208ENST00000458707 APBA3O96018 575 aa8.79□□□□□ -1
VPS50-208ENST00000458707 APOEP02649 317 aa8.79□□□□□ -1
VPS50-208ENST00000458707 MMP10P09238 476 aa8.79□□□□□ -1
VPS50-208ENST00000458707 ZCCHC18P0CG32 403 aa8.79□□□□□ -1
VPS50-208ENST00000458707 L1CAMP32004 1257 aa8.79□□□□□ -1
VPS50-208ENST00000458707 MAGEA3P43357 314 aa8.79□□□□□ -1
VPS50-208ENST00000458707 MAGEA10P43363 369 aaPredicted RBP8.79□□□□□ -1
VPS50-208ENST00000458707 GABRB2P47870 512 aa8.79□□□□□ -1
VPS50-208ENST00000458707 NRLP54845 237 aa8.79□□□□□ -1
VPS50-208ENST00000458707 SH3BGRP55822 239 aaPredicted RBP8.79□□□□□ -1
VPS50-208ENST00000458707 BAATQ14032 418 aaPredicted RBP8.79□□□□□ -1
VPS50-208ENST00000458707 HIC1Q14526 733 aa8.79□□□□□ -1
VPS50-208ENST00000458707 SURF1Q15526 300 aa8.79□□□□□ -1
VPS50-208ENST00000458707 GPR162Q16538 588 aa8.79□□□□□ -1
VPS50-208ENST00000458707 CLPPQ16740 277 aaPredicted RBP8.79□□□□□ -1
VPS50-208ENST00000458707 FAM47CQ5HY64 1035 aa8.79□□□□□ -1
VPS50-208ENST00000458707 RABGAP1LQ5R372 815 aa8.79□□□□□ -1
VPS50-208ENST00000458707 PGM2L1Q6PCE3 622 aa8.79□□□□□ -1
VPS50-208ENST00000458707 DARS2Q6PI48 645 aaKnown RBP8.79□□□□□ -1
VPS50-208ENST00000458707 TIFABQ6ZNK6 161 aa8.79□□□□□ -1
VPS50-208ENST00000458707 CYP4V2Q6ZWL3 525 aaPredicted RBP8.79□□□□□ -1
VPS50-208ENST00000458707 RAPH1Q70E73 1250 aa8.79□□□□□ -1
VPS50-208ENST00000458707 MARK2Q7KZI7 788 aaKnown RBP8.79□□□□□ -1
VPS50-208ENST00000458707 CAND1Q86VP6 1230 aaKnown RBP8.79□□□□□ -1
VPS50-208ENST00000458707 MTMR14Q8NCE2 650 aa8.79□□□□□ -1
VPS50-208ENST00000458707 STKLD1Q8NE28 680 aa8.79□□□□□ -1
VPS50-208ENST00000458707 MCUQ8NE86 351 aa8.79□□□□□ -1
VPS50-208ENST00000458707 OR6Y1Q8NGX8 325 aa8.79□□□□□ -1
VPS50-208ENST00000458707 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.79□□□□□ -1
VPS50-208ENST00000458707 FAF2Q96CS3 445 aa8.79□□□□□ -1
VPS50-208ENST00000458707 MCRS1Q96EZ8 462 aa8.79□□□□□ -1
VPS50-208ENST00000458707 CFAP36Q96G28 342 aa8.79□□□□□ -1
VPS50-208ENST00000458707 TTC1Q99614 292 aa8.79□□□□□ -1
VPS50-208ENST00000458707 DDX50Q9BQ39 737 aaKnown RBP8.79□□□□□ -1
VPS50-208ENST00000458707 NIFKQ9BYG3 293 aaKnown RBP8.79□□□□□ -1
VPS50-208ENST00000458707 MTMR12Q9C0I1 747 aa8.79□□□□□ -1
VPS50-208ENST00000458707 SDCBP2Q9H190 292 aa8.79□□□□□ -1
VPS50-208ENST00000458707 VCX3BQ9H321 246 aa8.79□□□□□ -1
VPS50-208ENST00000458707 EPB41L1Q9H4G0 881 aa8.79□□□□□ -1
VPS50-208ENST00000458707 VCX3AQ9NNX9 186 aa8.79□□□□□ -1
VPS50-208ENST00000458707 SMYD2Q9NRG4 433 aa8.79□□□□□ -1
VPS50-208ENST00000458707 THAP1Q9NVV9 213 aa8.79□□□□□ -1
VPS50-208ENST00000458707 TJP2Q9UDY2 1190 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms