RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 CXCR5P32302 372 aa20.06■□□□□ 0.8
RPS28-202ENST00000449223 NRIP1P48552 1158 aa20.06■□□□□ 0.8
RPS28-202ENST00000449223 ATXN1P54253 815 aaKnown RBP20.06■□□□□ 0.8
RPS28-202ENST00000449223 TMEM184AQ6ZMB5 413 aa20.06■□□□□ 0.8
RPS28-202ENST00000449223 RBM23Q86U06 439 aaKnown RBP20.06■□□□□ 0.8
RPS28-202ENST00000449223 RBM41Q96IZ5 413 aaKnown RBP20.06■□□□□ 0.8
RPS28-202ENST00000449223 PSMB7Q99436 277 aa20.06■□□□□ 0.8
RPS28-202ENST00000449223 NSUN3Q9H649 340 aaKnown RBP20.06■□□□□ 0.8
RPS28-202ENST00000449223 FAM204AQ9H8W3 233 aa20.06■□□□□ 0.8
RPS28-202ENST00000449223 COLQQ9Y215 455 aaPredicted RBP20.06■□□□□ 0.8
RPS28-202ENST00000449223 TLR6Q9Y2C9 796 aa20.06■□□□□ 0.8
RPS28-202ENST00000449223 RFXAPO00287 272 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 XYLBO75191 536 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 RFPL2O75678 378 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 ZRANB2O95218 330 aaKnown RBP eCLIP20.05■□□□□ 0.8
RPS28-202ENST00000449223 FGF19O95750 216 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 OAS1P00973 400 aaKnown RBP20.05■□□□□ 0.8
RPS28-202ENST00000449223 RARAP10276 462 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 PYGMP11217 842 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 PFKLP17858 780 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 PTPN7P35236 360 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 SSR1P43307 286 aaKnown RBP20.05■□□□□ 0.8
RPS28-202ENST00000449223 COPS2P61201 443 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 PPP2R5DQ14738 602 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 WHAMMP3Q1A5X7 153 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 BRMS1LQ5PSV4 323 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 HECTD3Q5T447 861 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 ERMARDQ5T6L9 678 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 RSRC2Q7L4I2 434 aaKnown RBP20.05■□□□□ 0.8
RPS28-202ENST00000449223 ADAM32Q8TC27 787 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 ACTRT1Q8TDG2 376 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 SLC39A13Q96H72 371 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 PRKD2Q9BZL6 878 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.05■□□□□ 0.87e-6■■■■□ 20.5
RPS28-202ENST00000449223 PCSK1NQ9UHG2 260 aa20.05■□□□□ 0.8
RPS28-202ENST00000449223 ZNF487B1APH4 448 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 OLFM2O95897 454 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 IGLV3-27P01718 113 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 POU3F3P20264 500 aaPredicted RBP20.04■□□□□ 0.8
RPS28-202ENST00000449223 CDC25CP30307 473 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 DNA2P51530 1060 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 ARSEP51690 589 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 RING1Q06587 406 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 NME3Q13232 169 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 CLUL1Q15846 466 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 DPYSL2Q16555 572 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 TAZQ16635 292 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 ATP13A4Q4VNC1 1196 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 GAREM2Q75VX8 874 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 SND1Q7KZF4 910 aaKnown RBP eCLIP20.04■□□□□ 0.8
RPS28-202ENST00000449223 ZNF572Q7Z3I7 529 aaPredicted RBP20.04■□□□□ 0.8
RPS28-202ENST00000449223 FAM131BQ86XD5 332 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 RCOR2Q8IZ40 523 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 NOTCH4Q99466 2003 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 SNRNP25Q9BV90 132 aaKnown RBP20.04■□□□□ 0.8
RPS28-202ENST00000449223 CCSER2Q9H7U1 834 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 ASAH2Q9NR71 780 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 DZANK1Q9NVP4 752 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 ARHGEF38Q9NXL2 777 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 FZD10Q9ULW2 581 aa20.04■□□□□ 0.8
RPS28-202ENST00000449223 C3orf70A6NLC5 250 aaPredicted RBP20.03■□□□□ 0.8
RPS28-202ENST00000449223 SOBPA7XYQ1 873 aa20.03■□□□□ 0.8
RPS28-202ENST00000449223 ZNF185O15231 689 aa20.03■□□□□ 0.8
RPS28-202ENST00000449223 CCL16O15467 120 aa20.03■□□□□ 0.8
RPS28-202ENST00000449223 PTPN2P17706 415 aa20.03■□□□□ 0.8
RPS28-202ENST00000449223 ATP5C1P36542 298 aaKnown RBP20.03■□□□□ 0.8
RPS28-202ENST00000449223 KPNA1P52294 538 aaPredicted RBP20.03■□□□□ 0.8
RPS28-202ENST00000449223 PPP2R5EQ16537 467 aa20.03■□□□□ 0.8
RPS28-202ENST00000449223 SMTNL2Q2TAL5 461 aa20.03■□□□□ 0.8
RPS28-202ENST00000449223 KCNT1Q5JUK3 1230 aa20.03■□□□□ 0.8
RPS28-202ENST00000449223 SCYL2Q6P3W7 929 aa20.03■□□□□ 0.8
RPS28-202ENST00000449223 CCDC185Q8N715 623 aa20.03■□□□□ 0.8
RPS28-202ENST00000449223 VN1R2Q8NFZ6 395 aa20.03■□□□□ 0.8
RPS28-202ENST00000449223 ZNF707Q96C28 371 aaPredicted RBP20.03■□□□□ 0.8
RPS28-202ENST00000449223 ZWILCHQ9H900 591 aa20.03■□□□□ 0.8
RPS28-202ENST00000449223 MARCH2Q9P0N8 246 aa20.03■□□□□ 0.8
RPS28-202ENST00000449223 SFMBT1Q9UHJ3 866 aa20.03■□□□□ 0.8
RPS28-202ENST00000449223 EFR3BQ9Y2G0 817 aa20.03■□□□□ 0.8
RPS28-202ENST00000449223 HBS1LQ9Y450 684 aaKnown RBP20.03■□□□□ 0.8
RPS28-202ENST00000449223 SLC2A3P11169 496 aa20.02■□□□□ 0.8
RPS28-202ENST00000449223 GABRR2P28476 465 aa20.02■□□□□ 0.8
RPS28-202ENST00000449223 CCR1P32246 355 aa20.02■□□□□ 0.8
RPS28-202ENST00000449223 ADRA1BP35368 520 aa20.02■□□□□ 0.8
RPS28-202ENST00000449223 MTA1Q13330 715 aa20.02■□□□□ 0.8
RPS28-202ENST00000449223 PDK2Q15119 407 aa20.02■□□□□ 0.8
RPS28-202ENST00000449223 TRIP4Q15650 581 aaPredicted RBP20.02■□□□□ 0.8
RPS28-202ENST00000449223 C10orf120Q5SQS8 335 aa20.02■□□□□ 0.8
RPS28-202ENST00000449223 SEL1L2Q5TEA6 688 aa20.02■□□□□ 0.8
RPS28-202ENST00000449223 EFHBQ8N7U6 833 aa20.02■□□□□ 0.8
RPS28-202ENST00000449223 RAPGEF5Q92565 580 aa20.02■□□□□ 0.8
RPS28-202ENST00000449223 TTYH1Q9H313 450 aaPredicted RBP20.02■□□□□ 0.8
RPS28-202ENST00000449223 WDCPQ9H6R7 721 aa20.02■□□□□ 0.8
RPS28-202ENST00000449223 SFXN1Q9H9B4 322 aa20.02■□□□□ 0.8
RPS28-202ENST00000449223 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.02■□□□□ 0.8
RPS28-202ENST00000449223 SLTMQ9NWH9 1034 aaKnown RBP eCLIP20.02■□□□□ 0.8
RPS28-202ENST00000449223 DNMT3LQ9UJW3 386 aa20.02■□□□□ 0.8
RPS28-202ENST00000449223 NUDT5Q9UKK9 219 aa20.02■□□□□ 0.8
RPS28-202ENST00000449223 AP4E1Q9UPM8 1137 aa20.02■□□□□ 0.8
RPS28-202ENST00000449223 KCNU1A8MYU2 1149 aa20.02■□□□□ 0.79
RPS28-202ENST00000449223 I6L893 689 aaPredicted RBP20.02■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms