RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 O00370 1275 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 ASMTLO95671 621 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 SYF2O95926 243 aaKnown RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 ZNF143P52747 638 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 CSE1LP55060 971 aaKnown RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 TBX4P57082 545 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 PTK6Q13882 451 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 SKIV2LQ15477 1246 aaKnown RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 TRADDQ15628 312 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 CES3Q6UWW8 571 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 RGS9BPQ6ZS82 235 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 APTXQ7Z2E3 356 aaKnown RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 ANKRD23Q86SG2 305 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 SLC26A7Q8TE54 656 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 GIPC2Q8TF65 315 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 LRRN4Q8WUT4 740 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 SNX19Q92543 992 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 NCLNQ969V3 563 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 SENP6Q9GZR1 1112 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 FBXO44Q9H4M3 255 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 CCT8L1PA6NM43 557 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 CLDN5O00501 218 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 OPLAHO14841 1288 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 PYGBP11216 843 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 CPA2P48052 419 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 LAMB3Q13751 1172 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 ARHGEF7Q14155 803 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 BTG3Q14201 252 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 ANKRD20A4Q4UJ75 823 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 ANKRD20A8PQ5CZ79 823 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 RABGAP1LQ5R372 815 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 ANKRD20A2Q5SQ80 823 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 PPP1R26Q5T8A7 1209 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 ANKRD20A1Q5TYW2 823 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 CCNJLQ8IV13 435 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 TMEM86AQ8N2M4 240 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 DDI1Q8WTU0 396 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 EML4Q9HC35 981 aaKnown RBP12.68□□□□□ -0.38
TCOF1-205ENST00000439160 STOML1Q9UBI4 398 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 PHTF1Q9UMS5 762 aa12.68□□□□□ -0.38
TCOF1-205ENST00000439160 ZNF536O15090 1300 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 DARSP14868 501 aaKnown RBP12.67□□□□□ -0.38
TCOF1-205ENST00000439160 ADSSP30520 456 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 SATB1Q01826 763 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 MMRN1Q13201 1228 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 NOGQ13253 232 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 TIGD7Q6NT04 549 aaPredicted RBP12.67□□□□□ -0.38
TCOF1-205ENST00000439160 STRA8Q7Z7C7 330 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 CARNMT1Q8N4J0 409 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 PIP4K2CQ8TBX8 421 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 WNT8BQ93098 351 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 PBXIP1Q96AQ6 731 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 TLR8Q9NR97 1041 aaKnown RBP12.67□□□□□ -0.38
TCOF1-205ENST00000439160 VPS28Q9UK41 221 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 B4GALT4O60513 344 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 ANP32DO95626 131 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 C4BPAP04003 597 aaKnown RBP12.67□□□□□ -0.38
TCOF1-205ENST00000439160 YWHAQP27348 245 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 ANKRD52Q8NB46 1076 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 JOSD2Q8TAC2 188 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 C7orf43Q8WVR3 580 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 MAML3Q96JK9 1138 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 ZFP42Q96MM3 310 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 SNRNP25Q9BV90 132 aaKnown RBP12.67□□□□□ -0.38
TCOF1-205ENST00000439160 TMEM39AQ9NV64 488 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 TUBGCP4Q9UGJ1 667 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 VANGL2Q9ULK5 521 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 NCAM2O15394 837 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 RHOBTB1O94844 696 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 PYGLP06737 847 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 NOS2P35228 1153 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 SCNN1BP51168 640 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 CCL23P55773 120 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 OXCT1P55809 520 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 MARC1Q5VT66 337 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 KRT80Q6KB66 452 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 SZRD1Q7Z422 152 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 LCA5Q86VQ0 697 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 PPP2R3CQ969Q6 453 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 MRPL45Q9BRJ2 306 aaKnown RBP12.67□□□□□ -0.38
TCOF1-205ENST00000439160 SLC24A3Q9HC58 644 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 FAM105AQ9NUU6 356 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 DMAC2Q9NW81 257 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 PKP3Q9Y446 797 aa12.67□□□□□ -0.38
TCOF1-205ENST00000439160 VIRMAQ69YN4 1812 aaKnown RBP12.67□□□□□ -0.38
TCOF1-205ENST00000439160 RBAK-RBAKDNI3L0D1 243 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 DHX15O43143 795 aaKnown RBP12.66□□□□□ -0.38
TCOF1-205ENST00000439160 HOXC6P09630 235 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 PTPN20Q4JDL3 420 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 TSHZ1Q6ZSZ6 1077 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 PARP9Q8IXQ6 854 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 SH3KBP1Q96B97 665 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 HSFY1Q96LI6 401 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 RRN3Q9NYV6 651 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 SLC24A2Q9UI40 661 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 CNTNAP1P78357 1384 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 SUPT3HB4E1H0 165 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 SUPT3HO75486 399 aa12.66□□□□□ -0.38
TCOF1-205ENST00000439160 TRUB2O95900 331 aaKnown RBP12.66□□□□□ -0.38
TCOF1-205ENST00000439160 RHOCP08134 193 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms