RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 USP45Q70EL2 814 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 PPP1R10Q96QC0 940 aaKnown RBP11.5□□□□□ -0.57
SCN4A-201ENST00000435607 ING3Q9NXR8 418 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 OGTO15294 1046 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 RPS6P62753 249 aaKnown RBP11.5□□□□□ -0.57
SCN4A-201ENST00000435607 RHAGQ02094 409 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 PRR23CQ6ZRP0 262 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 R3HCC1LQ7Z5L2 792 aaKnown RBP11.5□□□□□ -0.57
SCN4A-201ENST00000435607 KRT73Q86Y46 540 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 POLR1BQ9H9Y6 1135 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 COMMD8Q9NX08 183 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 GGT7Q9UJ14 662 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 SDR42E2A6NKP2 422 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 C1QTNF3-AMACRE9PGA6 284 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 LYNP07948 512 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 CNTFP26441 200 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 RAD23AP54725 363 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 SLC18A3Q16572 532 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 DDR2Q16832 855 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 FAM220AQ7Z4H9 259 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 KLHL23Q8NBE8 558 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 REEP2Q9BRK0 252 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 CAAP1Q9H8G2 361 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 INTS13Q9NVM9 706 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 AMACRQ9UHK6 382 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 ADAMTS12P58397 1594 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 UBE2Q2LH0YL09 131 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 DLGAP3O95886 979 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 NTSP30990 170 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 NAMPTP43490 491 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 PIK3CGP48736 1102 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 FAAH2Q6GMR7 532 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 TBC1D10CQ8IV04 446 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 CERKQ8TCT0 537 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 CEP44Q9C0F1 390 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 KATNA1O75449 491 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 KRT34O76011 436 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 PSMD4P55036 377 aaKnown RBP11.5□□□□□ -0.57
SCN4A-201ENST00000435607 CPSF1Q10570 1443 aaKnown RBP11.5□□□□□ -0.57
SCN4A-201ENST00000435607 SF3B3Q15393 1217 aaKnown RBP11.5□□□□□ -0.57
SCN4A-201ENST00000435607 ALKBH2Q6NS38 261 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 CYB5R4Q7L1T6 521 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 CHPFQ8IZ52 775 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 SIX5Q8N196 739 aa11.5□□□□□ -0.57
SCN4A-201ENST00000435607 UBA2Q9UBT2 640 aaPredicted RBP11.5□□□□□ -0.57
SCN4A-201ENST00000435607 CRB1P82279 1406 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 SMTNL2Q2TAL5 461 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 ATP13A4Q4VNC1 1196 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 SLC30A9Q6PML9 568 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 TRPC4APQ8TEL6 797 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 FAM120BQ96EK7 910 aaKnown RBP11.49□□□□□ -0.57
SCN4A-201ENST00000435607 BTBD9Q96Q07 612 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 ROPN1BQ9BZX4 212 aaPredicted RBP11.49□□□□□ -0.57
SCN4A-201ENST00000435607 ROPN1Q9HAT0 212 aaPredicted RBP11.49□□□□□ -0.57
SCN4A-201ENST00000435607 MBD2Q9UBB5 411 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 PNPLA7Q6ZV29 1317 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 KPNA3O00505 521 aaPredicted RBP11.49□□□□□ -0.57
SCN4A-201ENST00000435607 TRIM66O15016 1216 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 IL6P05231 212 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 CLCN6P51797 869 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 TRIQKQ629K1 86 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 KLHL35Q6PF15 583 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 KIAA1324Q6UXG2 1013 aaKnown RBP11.49□□□□□ -0.57
SCN4A-201ENST00000435607 MCEMP1Q8IX19 187 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 MKNK1Q9BUB5 465 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 CCSER1Q9C0I3 900 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 EFCAB1Q9HAE3 211 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 ZBTB12Q9Y330 459 aaPredicted RBP11.49□□□□□ -0.57
SCN4A-201ENST00000435607 OR10H2O60403 315 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 COX7A2P14406 83 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 AMHR2Q16671 573 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 INSCQ1MX18 579 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 TAF2Q6P1X5 1199 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 TRIM63Q969Q1 353 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 CXorf40BQ96DE9 158 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 YIPF3Q9GZM5 350 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 RNF208Q9H0X6 261 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 DBR1Q9UK59 544 aaKnown RBP11.49□□□□□ -0.57
SCN4A-201ENST00000435607 SPATA2Q9UM82 520 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 RCVRNP35243 200 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 MRPS25P82663 173 aaKnown RBP11.49□□□□□ -0.57
SCN4A-201ENST00000435607 PARP9Q8IXQ6 854 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 NT5MQ9NPB1 228 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 CCDC85CA6NKD9 419 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 ZNF23P17027 643 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 COPAP53621 1224 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 CHI3L2Q15782 390 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 MPZL3Q6UWV2 235 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 MARK2Q7KZI7 788 aaKnown RBP11.49□□□□□ -0.57
SCN4A-201ENST00000435607 NECAB2Q7Z6G3 386 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 MIER2Q8N344 545 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 PROX1Q92786 737 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 FAM84BQ96KN1 310 aaPredicted RBP11.49□□□□□ -0.57
SCN4A-201ENST00000435607 RRAGDQ9NQL2 400 aaPredicted RBP11.49□□□□□ -0.57
SCN4A-201ENST00000435607 MARK1Q9P0L2 795 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 ABI3Q9P2A4 366 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 DAGLAQ9Y4D2 1042 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 MAGEB16A2A368 324 aa11.49□□□□□ -0.57
SCN4A-201ENST00000435607 BCLAF3A2AJT9 711 aaKnown RBP11.49□□□□□ -0.57
SCN4A-201ENST00000435607 MAGEA9P43362 315 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms