RNA–Protein interactions for RNA: ENST00000435455.5

SMPD4-207, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 5

Gene SMPD4, Length 842 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-207ENST00000435455 RIF1Q5UIP0 2472 aaKnown RBP16.98■□□□□ 0.31
SMPD4-207ENST00000435455 E5RJQ4 531 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 F8VZ95 297 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 KLKB1P03952 638 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 GRIA2P42262 883 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 SLC6A11P48066 632 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 HARS2P49590 506 aaKnown RBP16.98■□□□□ 0.31
SMPD4-207ENST00000435455 MRE11P49959 708 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 UBXN1Q04323 297 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 SYCP1Q15431 976 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 TRIP4Q15650 581 aaPredicted RBP16.98■□□□□ 0.31
SMPD4-207ENST00000435455 SKOR2Q2VWA4 1001 aaPredicted RBP16.98■□□□□ 0.31
SMPD4-207ENST00000435455 NUDT18Q6ZVK8 323 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 BEND5Q7L4P6 421 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 ETFBKMTQ8IXQ9 262 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 NEK11Q8NG66 645 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 NELL1Q92832 810 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 ACDQ96AP0 544 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 PPP1R13BQ96KQ4 1090 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 PCMTD1Q96MG8 357 aaPredicted RBP16.98■□□□□ 0.31
SMPD4-207ENST00000435455 XPO6Q96QU8 1125 aaKnown RBP16.98■□□□□ 0.31
SMPD4-207ENST00000435455 ERGIC2Q96RQ1 377 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 BBS2Q9BXC9 721 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 PDCL3Q9H2J4 239 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 FAM207AQ9NSI2 230 aaPredicted RBP16.98■□□□□ 0.31
SMPD4-207ENST00000435455 ZSCAN32Q9NX65 697 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 DEC1Q9P2X7 70 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 R4GN57 208 aa16.98■□□□□ 0.31
SMPD4-207ENST00000435455 NEDD8-MDP1E9PL57 170 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 PAPSS1O43252 624 aaPredicted RBP16.97■□□□□ 0.31
SMPD4-207ENST00000435455 CACNG3O60359 315 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 KAT7O95251 611 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 LATS1O95835 1130 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 TDGF1P13385 188 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 TNFRSF4P43489 277 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 POLR2FP61218 127 aaKnown RBP16.97■□□□□ 0.31
SMPD4-207ENST00000435455 KDSRQ06136 332 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 RING1Q06587 406 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 TSSK4Q6SA08 328 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 TPGS1Q6ZTW0 290 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 APTXQ7Z2E3 356 aaKnown RBP16.97■□□□□ 0.31
SMPD4-207ENST00000435455 C12orf40Q86WS4 652 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 DENND1CQ8IV53 801 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 PASD1Q8IV76 773 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 DHX40Q8IX18 779 aaKnown RBP16.97■□□□□ 0.31
SMPD4-207ENST00000435455 WDTC1Q8N5D0 677 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 ZBTB44Q8NCP5 570 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 ATRIPQ8WXE1 791 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 EZH1Q92800 747 aaPredicted RBP16.97■□□□□ 0.31
SMPD4-207ENST00000435455 NKD2Q969F2 451 aaPredicted RBP16.97■□□□□ 0.31
SMPD4-207ENST00000435455 CPXM1Q96SM3 734 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 FUCA2Q9BTY2 467 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 SFMBT1Q9UHJ3 866 aa16.97■□□□□ 0.31
SMPD4-207ENST00000435455 AGO1Q9UL18 857 aaKnown RBP16.97■□□□□ 0.31
SMPD4-207ENST00000435455 A0A0A0MRY4 1105 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 SYCE3A1L190 88 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 K7EQS6 105 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 CAPN9O14815 690 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 TULP3O75386 442 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 NCAM1P13591 858 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 ATP1A3P13637 1013 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 TYRP14679 529 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 CYP11B1P15538 503 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 HOXA6P31267 233 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 HOXD11P31277 338 aaPredicted RBP16.96■□□□□ 0.31
SMPD4-207ENST00000435455 KLK7P49862 253 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 MRPS21P82921 87 aaKnown RBP16.96■□□□□ 0.31
SMPD4-207ENST00000435455 NNTQ13423 1086 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 NUGGCQ68CJ6 796 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 GRAMD4Q6IC98 578 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 PKN3Q6P5Z2 889 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 UNC45BQ8IWX7 931 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 CPXM2Q8N436 756 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 NAT16Q8N8M0 369 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 TMEM35BQ8NCS4 154 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 C1orf131Q8NDD1 294 aaKnown RBP16.96■□□□□ 0.31
SMPD4-207ENST00000435455 RPLP0P6Q8NHW5 317 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 SERPINB11Q96P15 392 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 SPAG5Q96R06 1193 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 POPDC2Q9HBU9 364 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 NLRC4Q9NPP4 1024 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 DNAJC17Q9NVM6 304 aaKnown RBP16.96■□□□□ 0.31
SMPD4-207ENST00000435455 SLC8A2Q9UPR5 921 aa16.96■□□□□ 0.31
SMPD4-207ENST00000435455 MYO18AQ92614 2054 aaKnown RBP16.96■□□□□ 0.31
SMPD4-207ENST00000435455 FAM186AA6NE01 2351 aa16.95■□□□□ 0.3
SMPD4-207ENST00000435455 K7ESF4 209 aa16.95■□□□□ 0.3
SMPD4-207ENST00000435455 MSI1O43347 362 aaKnown RBP16.95■□□□□ 0.3
SMPD4-207ENST00000435455 LSM8O95777 96 aaKnown RBP16.95■□□□□ 0.3
SMPD4-207ENST00000435455 CAVIN2O95810 425 aa16.95■□□□□ 0.3
SMPD4-207ENST00000435455 CYBBP04839 570 aa16.95■□□□□ 0.3
SMPD4-207ENST00000435455 FYNP06241 537 aa16.95■□□□□ 0.3
SMPD4-207ENST00000435455 GLI1P08151 1106 aa16.95■□□□□ 0.3
SMPD4-207ENST00000435455 JAM2P57087 298 aa16.95■□□□□ 0.3
SMPD4-207ENST00000435455 YWHAZP63104 245 aaKnown RBP16.95■□□□□ 0.3
SMPD4-207ENST00000435455 HSF5Q4G112 596 aaPredicted RBP16.95■□□□□ 0.3
SMPD4-207ENST00000435455 EFHC1Q5JVL4 640 aa16.95■□□□□ 0.3
SMPD4-207ENST00000435455 ALYREFQ86V81 257 aaKnown RBP16.95■□□□□ 0.3
SMPD4-207ENST00000435455 ZNF677Q86XU0 584 aa16.95■□□□□ 0.3
SMPD4-207ENST00000435455 FAM217AQ8IXS0 508 aa16.95■□□□□ 0.3
SMPD4-207ENST00000435455 PHTF2Q8N3S3 785 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms