RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 PLD4Q96BZ4 506 aa19.48■□□□□ 0.71
SHH-203ENST00000435425 DCLK3Q9C098 648 aa19.48■□□□□ 0.71
SHH-203ENST00000435425 POPDC2Q9HBU9 364 aa19.48■□□□□ 0.71
SHH-203ENST00000435425 FBRSL1Q9HCM7 1045 aaKnown RBP19.48■□□□□ 0.71
SHH-203ENST00000435425 HBS1LQ9Y450 684 aaKnown RBP19.48■□□□□ 0.71
SHH-203ENST00000435425 ATG2BQ96BY7 2078 aa19.48■□□□□ 0.71
SHH-203ENST00000435425 ZDBF2Q9HCK1 2354 aa19.48■□□□□ 0.71
SHH-203ENST00000435425 LRRC53A6NM62 1247 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 TRDMT1O14717 391 aaKnown RBP19.47■□□□□ 0.71
SHH-203ENST00000435425 GALR2O43603 387 aaPredicted RBP19.47■□□□□ 0.71
SHH-203ENST00000435425 FERP16591 822 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 SLC6A11P48066 632 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 NOMO3P69849 1222 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 GAD2Q05329 585 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 GRSF1Q12849 480 aaKnown RBP eCLIP19.47■□□□□ 0.71
SHH-203ENST00000435425 LRRC32Q14392 662 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 GAB4Q2WGN9 574 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 EFHC1Q5JVL4 640 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 FSTL4Q6MZW2 842 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 Q6ZNB5 142 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 PRSS33Q8NF86 280 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 DQX1Q8TE96 717 aaKnown RBP19.47■□□□□ 0.71
SHH-203ENST00000435425 BAP1Q92560 729 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 BHMTQ93088 406 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 EXOC4Q96A65 974 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 CLDN23Q96B33 292 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 C18orf8Q96DM3 657 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 SPATA6Q9NWH7 488 aaPredicted RBP19.47■□□□□ 0.71
SHH-203ENST00000435425 AGO1Q9UL18 857 aaKnown RBP19.47■□□□□ 0.71
SHH-203ENST00000435425 ZNF510Q9Y2H8 683 aa19.47■□□□□ 0.71
SHH-203ENST00000435425 F5P12259 2224 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 LSM8O95777 96 aaKnown RBP19.46■□□□□ 0.71
SHH-203ENST00000435425 EGFP01133 1207 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 OPRD1P41143 372 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 HARS2P49590 506 aaKnown RBP19.46■□□□□ 0.71
SHH-203ENST00000435425 TBX4P57082 545 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 ZNF445P59923 1031 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 RNASE9P60153 205 aaKnown RBP19.46■□□□□ 0.71
SHH-203ENST00000435425 SLC6A3Q01959 620 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 TRIP4Q15650 581 aaPredicted RBP19.46■□□□□ 0.71
SHH-203ENST00000435425 ASIC2Q16515 512 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 DCAF6Q58WW2 860 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 TMEM196Q5HYL7 178 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 OLFML1Q6UWY5 402 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 TOGARAM2Q6ZUX3 1019 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 C12orf40Q86WS4 652 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 DEFB106AQ8N104 65 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 MSANTD4Q8NCY6 345 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 SLC30A5Q8TAD4 765 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 CPLX3Q8WVH0 158 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 PCDHB18PQ96TA0 734 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 AGPAT1Q99943 283 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 TRIM62Q9BVG3 475 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 BBS2Q9BXC9 721 aa19.46■□□□□ 0.71
SHH-203ENST00000435425 XPO4Q9C0E2 1151 aaKnown RBP19.46■□□□□ 0.71
SHH-203ENST00000435425 SYNJ2BP-COX16A0A087WUM0 186 aa19.45■□□□□ 0.7
SHH-203ENST00000435425 NEDD8-MDP1E9PL57 170 aa19.45■□□□□ 0.7
SHH-203ENST00000435425 GOLGA8SH3BPF8 625 aa19.45■□□□□ 0.7
SHH-203ENST00000435425 CYP1A1P04798 512 aaPredicted RBP19.45■□□□□ 0.7
SHH-203ENST00000435425 CCDC172P0C7W6 258 aa19.45■□□□□ 0.7
SHH-203ENST00000435425 RPS9P46781 194 aaKnown RBP19.45■□□□□ 0.7
SHH-203ENST00000435425 KDSRQ06136 332 aa19.45■□□□□ 0.7
SHH-203ENST00000435425 DGKKQ5KSL6 1271 aa19.45■□□□□ 0.7
SHH-203ENST00000435425 SFMBT2Q5VUG0 894 aa19.45■□□□□ 0.7
SHH-203ENST00000435425 PHLDB2Q86SQ0 1253 aa19.45■□□□□ 0.7
SHH-203ENST00000435425 TAC4Q86UU9 113 aa19.45■□□□□ 0.7
SHH-203ENST00000435425 PLK2Q9NYY3 685 aa19.45■□□□□ 0.7
SHH-203ENST00000435425 COX16Q9P0S2 106 aa19.45■□□□□ 0.7
SHH-203ENST00000435425 H0Y858 1186 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 TSPAN3O60637 253 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 HSF2BPO75031 334 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 GLI1P08151 1106 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 PBX1P40424 430 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 MAGEA9P43362 315 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 PITX1P78337 314 aaPredicted RBP19.44■□□□□ 0.7
SHH-203ENST00000435425 CCINQ13939 588 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 FAM102AQ5T9C2 384 aaPredicted RBP19.44■□□□□ 0.7
SHH-203ENST00000435425 TRIM72Q6ZMU5 477 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 MMS22LQ6ZRQ5 1243 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 Q6ZS52 159 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 IRF2BP2Q7Z5L9 587 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 XYLT1Q86Y38 959 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 SERPINB11Q96P15 392 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 PNKPQ96T60 521 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 PRRX2Q99811 253 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 NUP58Q9BVL2 599 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 ASNSD1Q9NWL6 643 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 MYO6Q9UM54 1294 aa19.44■□□□□ 0.7
SHH-203ENST00000435425 TRUB2O95900 331 aaKnown RBP19.43■□□□□ 0.7
SHH-203ENST00000435425 TPM3P06753 285 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 TYRP14679 529 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 TNFAIP3P21580 790 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 DRD1P21728 446 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 CHKAP35790 457 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 GABRB2P47870 512 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 NUBP1P53384 320 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 CDK17Q00537 523 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 MTAPQ13126 283 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 ANGPT1Q15389 498 aa19.43■□□□□ 0.7
SHH-203ENST00000435425 CLEC16AQ2KHT3 1053 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms