RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 TRIM5Q9C035 493 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 OSBPL5Q9H0X9 879 aaPredicted RBP4.6□□□□□ -1.67
HMGB3-203ENST00000430118 SLC25A32Q9H2D1 315 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 G6PC2Q9NQR9 355 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 TBC1D22BQ9NU19 505 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 TMLHEQ9NVH6 421 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 TMEM160Q9NX00 188 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 GGA3Q9NZ52 723 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 IFT80Q9P2H3 777 aaPredicted RBP4.6□□□□□ -1.67
HMGB3-203ENST00000430118 HECAQ9UBI9 543 aaPredicted RBP4.6□□□□□ -1.67
HMGB3-203ENST00000430118 NARFQ9UHQ1 456 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 C19orf53Q9UNZ5 99 aaPredicted RBP4.6□□□□□ -1.67
HMGB3-203ENST00000430118 SCAF8Q9UPN6 1271 aaKnown RBP4.6□□□□□ -1.67
HMGB3-203ENST00000430118 ATP11BQ9Y2G3 1177 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 TNRC18O15417 2968 aaPredicted RBP4.6□□□□□ -1.67
HMGB3-203ENST00000430118 KIF20BQ96Q89 1820 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 FER1L6Q2WGJ9 1857 aa4.6□□□□□ -1.67
HMGB3-203ENST00000430118 CCDC195A0A1B0GUA6 201 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 HMX3A6NHT5 357 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 A6NLC8 198 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 DRGXA6NNA5 263 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 B9A039 149 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 DIRC3C9JPN6 131 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 K7ENM7 598 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 ETV2O00321 342 aaPredicted RBP4.59□□□□□ -1.67
HMGB3-203ENST00000430118 FFAR3O14843 346 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 DCLK1O15075 740 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 TRIM13O60858 407 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 CD4P01730 458 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 POLBP06746 335 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 ANXA6P08133 673 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 PECAM1P16284 738 aaPredicted RBP4.59□□□□□ -1.67
HMGB3-203ENST00000430118 PI3P19957 117 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 CR2P20023 1033 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 PXNP49023 591 aaPredicted RBP4.59□□□□□ -1.67
HMGB3-203ENST00000430118 DGKEP52429 567 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 KRT17Q04695 432 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 CHRNDQ07001 517 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 SOS1Q07889 1333 aaPredicted RBP4.59□□□□□ -1.67
HMGB3-203ENST00000430118 MAPK7Q13164 816 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 PRKG2Q13237 762 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 NFIXQ14938 502 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 ACAP1Q15027 740 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 PKN2Q16513 984 aaKnown RBP4.59□□□□□ -1.67
HMGB3-203ENST00000430118 CCDC88AQ3V6T2 1871 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 TTC22Q5TAA0 569 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 MANEALQ5VSG8 457 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 PDE4DIPQ5VU43 2346 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 FAM180BQ6P0A1 224 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 CFAP161Q6P656 301 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 LAYNQ6UX15 382 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 KRBA2Q6ZNG9 492 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 USP50Q70EL3 339 aaPredicted RBP4.59□□□□□ -1.67
HMGB3-203ENST00000430118 CTU1Q7Z7A3 348 aaKnown RBP4.59□□□□□ -1.67
HMGB3-203ENST00000430118 TTC30AQ86WT1 665 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 GPR135Q8IZ08 494 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 CNBD1Q8NA66 436 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 MDGA1Q8NFP4 955 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 MBD3L2Q8NHZ7 208 aaPredicted RBP4.59□□□□□ -1.67
HMGB3-203ENST00000430118 ABHD5Q8WTS1 349 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 HTRA1Q92743 480 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 DACT3Q96B18 629 aaPredicted RBP4.59□□□□□ -1.67
HMGB3-203ENST00000430118 NEIL1Q96FI4 390 aaPredicted RBP4.59□□□□□ -1.67
HMGB3-203ENST00000430118 MASTLQ96GX5 879 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 TRIB1Q96RU8 372 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 TREX2Q9BQ50 279 aaPredicted RBP4.59□□□□□ -1.67
HMGB3-203ENST00000430118 CPPED1Q9BRF8 314 aaPredicted RBP4.59□□□□□ -1.67
HMGB3-203ENST00000430118 MLXIPQ9HAP2 919 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 NOD2Q9HC29 1040 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 NDUFAF4Q9P032 175 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 DNAJB11Q9UBS4 358 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 CNOT6Q9ULM6 557 aaKnown RBP4.59□□□□□ -1.67
HMGB3-203ENST00000430118 HPSEQ9Y251 543 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 RABGAP1Q9Y3P9 1069 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 RAD54BQ9Y620 910 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 ARFGEF2Q9Y6D5 1785 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 RPS6KL1Q9Y6S9 549 aa4.59□□□□□ -1.67
HMGB3-203ENST00000430118 AFDNP55196 1824 aaKnown RBP4.58□□□□□ -1.68
HMGB3-203ENST00000430118 TJP1Q07157 1748 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 A0A087X0M5 115 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 A0A1B0GX30 115 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 CD3EAPO15446 510 aaKnown RBP4.58□□□□□ -1.68
HMGB3-203ENST00000430118 DHHO43323 396 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 TSPAN3O60637 253 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 STC2O76061 302 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 TMEM63AO94886 807 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 TFRCP02786 760 aaKnown RBP4.58□□□□□ -1.68
HMGB3-203ENST00000430118 ITGB1P05556 798 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 HLA-DOAP06340 250 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 CNPP09543 421 aaKnown RBP4.58□□□□□ -1.68
HMGB3-203ENST00000430118 LIFRP42702 1097 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 GCLCP48506 637 aaPredicted RBP4.58□□□□□ -1.68
HMGB3-203ENST00000430118 TOB1P50616 345 aaPredicted RBP4.58□□□□□ -1.68
HMGB3-203ENST00000430118 CLNS1AP54105 237 aaKnown RBP4.58□□□□□ -1.68
HMGB3-203ENST00000430118 BCAT1P54687 386 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 NAP1L1P55209 391 aaKnown RBP4.58□□□□□ -1.68
HMGB3-203ENST00000430118 GPS1Q13098 491 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 SSPNQ14714 243 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 CLCA4Q14CN2 919 aa4.58□□□□□ -1.68
HMGB3-203ENST00000430118 FAM214AQ32MH5 1076 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms