RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 C1QTNF9BB2RNN3 333 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 ZNF217O75362 1048 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 TOP3BO95985 862 aaKnown RBP15.24■□□□□ 0.03
SDC1-204ENST00000429035 C1QTNF9P0C862 333 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 CEACAM1P13688 526 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 CSRP1P21291 193 aaKnown RBP15.24■□□□□ 0.03
SDC1-204ENST00000429035 PSEN1P49768 467 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 STARD3Q14849 445 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 DUOXA1Q1HG43 343 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 GOLGA7BQ2TAP0 167 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 KLHDC10Q6PID8 442 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 UNQ6494/PRO21346Q6UXR6 183 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 Q6ZNB5 142 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 TRIML1Q8N9V2 468 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 FBXL13Q8NEE6 735 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 SEMA4DQ92854 862 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 CCDC34Q96HJ3 373 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 CDK5RAP1Q96SZ6 601 aaKnown RBP15.24■□□□□ 0.03
SDC1-204ENST00000429035 ARID3AQ99856 593 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 CISHQ9NSE2 258 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 STRIP2Q9ULQ0 834 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 STARD13Q9Y3M8 1113 aa15.24■□□□□ 0.03
SDC1-204ENST00000429035 CACNA1EQ15878 2313 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 SLC12A8A0AV02 714 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 MEI4A8MW99 385 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 WASH3PC4AMC7 463 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 CYBBP04839 570 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 SLC8A3P57103 927 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 GFPT1Q06210 699 aaPredicted RBP15.23■□□□□ 0.03
SDC1-204ENST00000429035 SPDYCQ5MJ68 293 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 SLC23A3Q6PIS1 610 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 DENND1CQ8IV53 801 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 SLC41A1Q8IVJ1 513 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 OR2I1PQ8NGU4 316 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 CEP76Q8TAP6 659 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 TMEM176AQ96HP8 235 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 GABRG3Q99928 467 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 ADAM33Q9BZ11 813 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 RAB20Q9NX57 234 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 SLC6A14Q9UN76 642 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 ZNF510Q9Y2H8 683 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 ZDHHC9Q9Y397 364 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 STON1Q9Y6Q2 735 aa15.23■□□□□ 0.03
SDC1-204ENST00000429035 CKAP5Q14008 2032 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 SPAARA0A1B0GVQ0 90 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 CETN3O15182 167 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 OPHN1O60890 802 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 ZNF202O95125 648 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 CD19P15391 556 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 GTF2H1P32780 548 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 HOXD12P35452 270 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 YWHAGP61981 247 aaKnown RBP eCLIP15.22■□□□□ 0.03
SDC1-204ENST00000429035 COG7P83436 770 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 ARID5AQ03989 594 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 PNOCQ13519 176 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 GEN1Q17RS7 908 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 ZCWPW2Q504Y3 356 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 RABEPKQ7Z6M1 372 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 PIGZQ86VD9 579 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 ARHGAP18Q8N392 663 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 MINDY1Q8N5J2 469 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 SLC4A11Q8NBS3 891 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 UCMAQ8WVF2 138 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 MRGPRX1Q96LB2 322 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 TSG101Q99816 390 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 DCLK3Q9C098 648 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 CIPCQ9C0C6 399 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 SCAND2PQ9GZW5 306 aaPredicted RBP15.22■□□□□ 0.03
SDC1-204ENST00000429035 CLIC5Q9NZA1 410 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 MARCH2Q9P0N8 246 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 ATP6V1DQ9Y5K8 247 aa15.22■□□□□ 0.03
SDC1-204ENST00000429035 FAM237AA0A1B0GTK4 181 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 A0A1W2PQ27 194 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 A0A1W2PQ64 194 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 A0A1W2PQD8 194 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 PCNX2A6NKB5 2137 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 STX10O60499 249 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 KLKB1P03952 638 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 PROS1P07225 676 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 CISD3P0C7P0 127 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 CHKAP35790 457 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 IL12RB1P42701 662 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 TKTL1P51854 596 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 RAD23BP54727 409 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 MFAP3P55082 362 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 EDRF1Q3B7T1 1238 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 PLEKHG6Q3KR16 790 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 FUT11Q495W5 492 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 FYB2Q5VWT5 728 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 PEAR1Q5VY43 1037 aaPredicted RBP15.21■□□□□ 0.03
SDC1-204ENST00000429035 ANKS1BQ7Z6G8 1248 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 TTC39CQ8N584 583 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 DDI1Q8WTU0 396 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 NDRG1Q92597 394 aaKnown RBP15.21■□□□□ 0.03
SDC1-204ENST00000429035 TATDN2Q93075 761 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 P2RY11Q96G91 374 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 SCNM1Q9BWG6 230 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 ULBP1Q9BZM6 244 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 LRRC4Q9HBW1 653 aa15.21■□□□□ 0.03
SDC1-204ENST00000429035 HESX1Q9UBX0 185 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms