RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ELF3P78545 371 aaPredicted RBP8.68□□□□□ -1.02
CD44-208ENST00000428726 TNFAIP8L3Q5GJ75 292 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 SLC27A1Q6PCB7 646 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 DSTYKQ6XUX3 929 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 CEP128Q6ZU80 1094 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 CYP4V2Q6ZWL3 525 aaPredicted RBP8.68□□□□□ -1.02
CD44-208ENST00000428726 ZNF354CQ86Y25 554 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 SCN4BQ8IWT1 228 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 ADGRF2Q8IZF7 708 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 EFCAB3Q8N7B9 438 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 APPL2Q8NEU8 664 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 CCHCR1Q8TD31 782 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 KBTBD7Q8WVZ9 684 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 BHMTQ93088 406 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 SMC6Q96SB8 1091 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 BCO2Q9BYV7 579 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 ADAMTS10Q9H324 1103 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 PCDH18Q9HCL0 1135 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 UBN1Q9NPG3 1134 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 FBXO6Q9NRD1 293 aaPredicted RBP8.68□□□□□ -1.02
CD44-208ENST00000428726 PCMTD2Q9NV79 361 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 PACSIN3Q9UKS6 424 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 AP4E1Q9UPM8 1137 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 IKBKGQ9Y6K9 419 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 REV3LO60673 3130 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 GOLGA4Q13439 2230 aaKnown RBP8.68□□□□□ -1.02
CD44-208ENST00000428726 YJEFN3A6XGL0 299 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 E7ENQ6 273 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 CCL22O00626 93 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 DIAPH2O60879 1101 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 HUS1O60921 280 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 BGNP21810 368 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 ATP5DP30049 168 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 LILRA4P59901 499 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 COPS2P61201 443 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 CRHR2Q13324 411 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 PPM1JQ5JR12 505 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 NOTUMQ6P988 496 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 POLNQ7Z5Q5 900 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 TTC7BQ86TV6 843 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 PDIK1LQ8N165 341 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 ZCCHC9Q8N567 271 aaKnown RBP8.68□□□□□ -1.02
CD44-208ENST00000428726 ANKS4BQ8N8V4 417 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 BEST2Q8NFU1 509 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 SLC35B2Q8TB61 432 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 NSMCE1Q8WV22 266 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 ERP27Q96DN0 273 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 SERPINB12Q96P63 405 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 CCDC77Q9BR77 488 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 ULBP1Q9BZM6 244 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 FOXP3Q9BZS1 431 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 AP5M1Q9H0R1 490 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 LRRC4Q9HBW1 653 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 SMYD2Q9NRG4 433 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 KRT82Q9NSB4 513 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 DDX43Q9NXZ2 648 aaKnown RBP8.68□□□□□ -1.02
CD44-208ENST00000428726 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.68□□□□□ -1.02
CD44-208ENST00000428726 SFMBT1Q9UHJ3 866 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 STRIP2Q9ULQ0 834 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 ST3GAL5Q9UNP4 418 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 NOD1Q9Y239 953 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 CDY2AQ9Y6F7 541 aa8.68□□□□□ -1.02
CD44-208ENST00000428726 TCRBV9S1A1TA0A576 114 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 WDR27A2RRH5 827 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 I6L893 689 aaPredicted RBP8.67□□□□□ -1.02
CD44-208ENST00000428726 CDH16O75309 829 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 IL18RAPO95256 599 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 SLC4A1P02730 911 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 KRT7P08729 469 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 P4HA1P13674 534 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 DARSP14868 501 aaKnown RBP8.67□□□□□ -1.02
CD44-208ENST00000428726 PSEN2P49810 448 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 ZNF143P52747 638 aaPredicted RBP8.67□□□□□ -1.02
CD44-208ENST00000428726 GDF6Q6KF10 455 aaPredicted RBP8.67□□□□□ -1.02
CD44-208ENST00000428726 DRICH1Q6PGQ1 229 aaPredicted RBP8.67□□□□□ -1.02
CD44-208ENST00000428726 OLFML1Q6UWY5 402 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 TRPM8Q7Z2W7 1104 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 ARMC2Q8NEN0 867 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 RFWD2Q8NHY2 731 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 AGAP11Q8TF27 550 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 EMID1Q96A84 441 aaPredicted RBP8.67□□□□□ -1.02
CD44-208ENST00000428726 KCTD15Q96SI1 283 aaPredicted RBP8.67□□□□□ -1.02
CD44-208ENST00000428726 ECT2Q9H8V3 914 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 DDX56Q9NY93 547 aaKnown RBP8.67□□□□□ -1.02
CD44-208ENST00000428726 TRIM49D1C9J1S8 452 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 MAGEB2O15479 319 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 MFSD11O43934 449 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 ATP6V1G2O95670 118 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 KRT16P08779 473 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 EZRP15311 586 aaKnown RBP8.67□□□□□ -1.02
CD44-208ENST00000428726 GPR15P49685 360 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 TKTL1P51854 596 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 PTK7Q13308 1070 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 NOMO1Q15155 1222 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 FSCN1Q16658 493 aaKnown RBP8.67□□□□□ -1.02
CD44-208ENST00000428726 NOMO2Q5JPE7 1267 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 FAM117BQ6P1L5 589 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 ISLR2Q6UXK2 745 aa8.67□□□□□ -1.02
CD44-208ENST00000428726 TMCO2Q7Z6W1 182 aaPredicted RBP8.67□□□□□ -1.02
CD44-208ENST00000428726 VSIG1Q86XK7 387 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms